PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00053767001
Common NameGSBRNA2T00053767001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 546aa    MW: 61206.7 Da    PI: 4.5904
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00053767001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-1813103199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+   + ++s  + +p +f e+ + +   ++t +l+   + +W+v +  +k ++r ++t+GW++F+++++ k+g+f++F +dg+++f
  GSBRNA2T00053767001  13 FFKVF--LSQTASESMAIPMSFNENLEDP--LPQTAKLQGIGSGVWTVSF--KKIRDRAYFTSGWSKFAEDHEFKDGEFLTFVYDGSHTF 96 
                          88999..666777779******9766655..889****************..********************************998888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v++f +
  GSBRNA2T00053767001  97 --EVSIFGR 103
                          ..8988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2310106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-2210106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.53511104IPR003340B3 DNA binding domain
CDDcd100172.05E-1711101No hitNo description
PfamPF023622.8E-1513103IPR003340B3 DNA binding domain
SMARTSM010196.6E-2313104IPR003340B3 DNA binding domain
SuperFamilySSF502491.71E-5340420IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1401.1E-5341424IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502491.4E-13443544IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1404.3E-6479544IPR012340Nucleic acid-binding, OB-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSGSEEDDVL PRFFKVFLSQ TASESMAIPM SFNENLEDPL PQTAKLQGIG SGVWTVSFKK  60
IRDRAYFTSG WSKFAEDHEF KDGEFLTFVY DGSHTFEVSI FGRSGCKEIR AAVETVNLSD  120
VDSDKKEEEE EDSSVVADTN KEEEEEGDDD DPSFDAGEDD EVSQSVDSDD IVSNAEVVEG  180
FSNLEVESNP CFTSTLKSRI YELLIPANVV KEHKLKFCDR IKYIDGEGIM HGVKGKWTDD  240
RIFFKGWDKI CRRLKSMILS TGTVAQGFNA QNRVNRYEDE LKRGSIYTLT NFFGSNNKRF  300
KFHSYADFEA NCDLRGDLHD VVGHLKLVDG QTLHQRLALC TNDGSTSRKI MVHLQLKDGP  360
VVNVDLWDQA AENFRRKFDE SVTTPTILMV TTVNPKRLGG KLCLSSMSSS RVFLDQEVDP  420
TKELAVNPAF ASSVNTVEVV NVETLTIREI ADFIKRQPAK IAYFDCIATI DDVKLGTEWY  480
YIACKVCQTK LTHGPTMLMC PKCCNENATA LANFRVELSV YDNEEQCTFI ILGDAGKELT  540
GRKAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1831061104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00053767001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-107AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607882.10.0PREDICTED: uncharacterized protein LOC106314575
TrEMBLA0A078H3B30.0A0A078H3B3_BRANA; BnaC09g22010D protein
STRINGBo9g074330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.17e-73B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]