PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052885001
Common NameGSBRNA2T00052885001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 464aa    MW: 51315.1 Da    PI: 6.2595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052885001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00117496123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C  Cgk+F++   L  H r H
  GSBRNA2T00052885001 74 HICCECGKRFKSGKALGGHKRIH 96
                         68*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.73E-672148No hitNo description
Gene3DG3DSA:3.30.160.604.5E-47296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.197496IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-77496IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.9774101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954126148IPR007087Zinc finger, C2H2
SMARTSM003552.9126148IPR015880Zinc finger, C2H2-like
PfamPF139120.0055128149IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576673.18E-7308331No hitNo description
PROSITE profilePS501579.411309336IPR007087Zinc finger, C2H2
SMARTSM003550.55309331IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-10309333IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
SuperFamilySSF576673.18E-7373400No hitNo description
PROSITE profilePS501579.494378400IPR007087Zinc finger, C2H2
SMARTSM003550.14378400IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-11378401IPR007087Zinc finger, C2H2
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDQCRFSLGR PRFGSIKFKV PNSSQPFISQ KRKEMEEEDQ AEEEAKSLGF REEEDGEDDD  60
GAKSIEEEEK KKKHICCECG KRFKSGKALG GHKRIHVLEA RKFSMVRPKM VAGAVGRSEE  120
RDDFEVDCCV CHKKFTSMKA LYGHMRFHPD RGWKGVLPPH HHHPLDHDGG EFISSDDDGD  180
GDYEDDDDDE NSELWDNHWG LDNVVDLKDS IKGWAVTGKR GRRSALKDPP PQDVDAKDLL  240
FLATTAEAVD LDAAETCDSR SVEEMMKKRK KKRKRLSEME KESTSSHDHH HQLEVGAAEE  300
GGGGAREKHV CVTCNKSFAS YQALGGHRAS HNKVKISENH QARANSEAVL LGTEAMMAGL  360
ATAQGPNTSL SIGNKGDHVC NICQKSFTTG QALGGHKRCH WPGPTSNEAA TAPVPASNES  420
ATTAPTPLVA CSSSQVTETV QEEKKLKRKF LEFDLNELPP NEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266270KKRKK
2266274KKRKKKRKR
3268274RKKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052885001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022566859.10.0zinc finger protein ZAT4-like
TrEMBLA0A078H5T10.0A0A078H5T1_BRANA; BnaA10g10420D protein
TrEMBLA0A3P6CH680.0A0A3P6CH68_BRACM; Uncharacterized protein
STRINGBo9g123640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]