PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00052872001
Common NameGSBRNA2T00052872001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 602aa    MW: 65107.7 Da    PI: 5.9352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00052872001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33407465159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  GSBRNA2T00052872001 407 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 465
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-37392467IPR003657WRKY domain
SuperFamilySSF1182901.31E-28399467IPR003657WRKY domain
PROSITE profilePS5081138.136402467IPR003657WRKY domain
SMARTSM007741.8E-37407466IPR003657WRKY domain
PfamPF031067.4E-25408465IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSGFDENVAV MGEWVPCNPT PGTLFSSSIG EDKTSKRVLE RELSLNHGQV TGLQEDTTGN  60
NDNNNDSSQN NNVSRGGLRE RIAARAGFNT PKLNTENIRS NAGFSMDSSS LRSPCLTISS  120
PGLSPATLLE SPVFLSNPLA QPSPTTGKFP FLPGVNSNGM FSDKAKDEFF DNIGASFTFQ  180
PVSRSSSSFF QGGGTEMVPV DYGSYNNRSS HQSPEDVTKN VGYTGQKRKT SETVDHQEEE  240
EEVEEEQRRG AHNHSKPPPN RRSGMQVDGT DQAEQQQQQQ QQQQQRDSAP TWVNCNNTQQ  300
QVESNENNVQ EGFEYGNQSG SVQAQTGGVV VVDASSTFSN EEDEDDRGTH GSASLGYDGG  360
GGGGGEGDES ESKRRKLEAY AAEMSGATRA IREPRVVVQT TSDVDILDDG YRWRKYGQKV  420
VKGNPNPRSY YKCTAPGCTV RKHVERASHD LKSVITTYEG KHNHDVPAAR NSSHGGGGNG  480
NSGGSAAQPH HFHEQPRGRY ERQLTASNHQ SPFGRPFSFQ PHLGPPSGYS FGLGQTGLAN  540
LSLPGLGFGQ GKLPGLPHPY MTQPGGMSEA MMHRGMEPKV EPVSETGQSV YNQIMSRLPQ  600
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37398468878Probable WRKY transcription factor 4
2lex_A2e-37398468878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.199730.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00052872001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841040.0FJ384104.1 Brassica napus cultivar Westar WRKY transcription factor 2 (WRKY2) mRNA, WRKY2-2 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611485.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_013611486.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A078H5Q50.0A0A078H5Q5_BRANA; BnaA10g10500D protein
STRINGBo9g123740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-169WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]