PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00052418001 | ||||||||
Common Name | GSBRNA2T00052418001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25391.2 Da PI: 7.1276 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.1 | 4.7e-42 | 6 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +GfrF+Ptd elv +yL++k +g ++ +++i++v+i++++Pw+Lp ++++++++ wyfF +++++y++g+r++r+tksgyWk+tgk+ GSBRNA2T00052418001 6 VGFRFRPTDVELVEHYLRPKNNGGGsTTSSQIINTVNICNLDPWELPplSRIASSDQVWYFFGRKESRYNRGERQKRKTKSGYWKKTGKT 95 8*******************999884444567**************9666999999********************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++k ++e++g k++L+fy +g++++Wvmheyr+ GSBRNA2T00052418001 96 LPITRKsgNHETIGEKRVLMFY----TNGSRSNWVMHEYRA 132 *****9877888**********....78999********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.128 | 4 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-44 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-26 | 6 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGNNMVGFRF RPTDVELVEH YLRPKNNGGG STTSSQIINT VNICNLDPWE LPPLSRIASS 60 DQVWYFFGRK ESRYNRGERQ KRKTKSGYWK KTGKTLPITR KSGNHETIGE KRVLMFYTNG 120 SRSNWVMHEY RASCLSPNDS GAYTICKVQF KGEASEISSS SGVDHVVHTH SLPTPMNNPV 180 GSEGLQSPSQ FSGNQQEMQF DAETEMDFED LLNYDLNSLL DSEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-25 | 7 | 131 | 18 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00052418001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118784.1 | 1e-166 | PREDICTED: NAC domain-containing protein 4-like isoform X1 | ||||
Swissprot | O81914 | 5e-71 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | A0A078H4Y0 | 1e-168 | A0A078H4Y0_BRANA; BnaA09g51470D protein | ||||
STRING | Bra032615.1-P | 1e-166 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 3e-72 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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