PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00051978001

Common Name

NF-YA9B

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 299aa MW: 32927.1 Da PI: 9.0422

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00051978001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.1	2.6e-32	160	216	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+I++RRq+Rak+e ekkl +ksrk+ylheSRh+hA+rRpRg+gGrF GSBRNA2T00051978001 160 QEPVYVNAKQYQAIMRRRQARAKAELEKKL-IKSRKRYLHESRHQHAMRRPRGTGGRF 216 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.5E-36	158	219	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.361	159	219	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.7E-27	161	216	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.5E-24	162	184	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	164	184	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.5E-24	193	216	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MHSKSKSGNQ IVSEAHHHTS SSSINSLNPW LRAAASCDAN SSVEEAGDKS IALENQTNLE 60 SSNGSKSPSN RDENGNKESQ VTASPQQSAA DYSEKSQELV HPGSTPPPHP QLVSHTVGWA 120 SSNPYQDSYY AGMMGAYPLT YVPHGGMPHS RMQLPPEMAQ EPVYVNAKQY QAIMRRRQAR 180 AKAELEKKLI KSRKRYLHES RHQHAMRRPR GTGGRFAKKT NTEASQQKDG EKRNACATQS 240 PTSSHSDQHE GCSDEYRTNQ SDEMQSSAYK IREEAGCSGQ QWNNISSNHP SQPLLAIK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	160	216	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.2178	0.0	bud\| flower\| leaf\| microspore\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00051978001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BNU33884	0.0	U33884.1 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds.
GenBank	BNU33885	0.0	U33885.1 Brassica napus clone bncbf-b2 CCAAT-binding factor B subunit homolog mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022553064.1	0.0	nuclear transcription factor Y subunit A-9-like isoform X1
Swissprot	Q945M9	1e-144	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	W6DGL3	0.0	W6DGL3_BRANA; Transcription factor subunit NF-YA9B
STRING	Bra001806.1-P	1e-178	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13268	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	1e-146	nuclear factor Y, subunit A9

Publications ? help Back to Top
Liang M, et al. Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.). Planta, 2014. 239(1): p. 107-26 [PMID:24097262] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]