|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GSBRNA2T00051175001 |
Common Name | GSBRNA2T00051175001 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
MIKC_MADS |
Protein Properties |
Length: 220aa MW: 25211.3 Da PI: 9.0661 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00051175001 | genome | Genoscope | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 87.3 | 8.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krie+ + rqvtfskRr+g+lKKA+ELSvLCda+va i+fs++g+ly+++s
GSBRNA2T00051175001 9 KRIEDVTSRQVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGRLYDFAS 59
79***********************************************86 PP
|
2 | K-box | 51.1 | 5.7e-18 | 83 | 177 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLr 95
++++ ++l++e+a ++i+ Lq R+l+G+dL s+s++eL+++ +++eksl+ +Rs+K++l ++ie+l+ ++e+ +e+ +Lr
GSBRNA2T00051175001 83 QKQQYVQELKNEMAITMDKIKLLQLHCRKLMGQDLYSCSVEELKEITTKIEKSLTIVRSRKTKLNEDKIEKLKAEivaQREVLNEKSSLR 172
5677889*****************999**********************************************86333677888889999 PP
K-box 96 kklee 100
+++ee
GSBRNA2T00051175001 173 QMFEE 177
98876 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MVRGKIEIKR IEDVTSRQVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS 60 DMQKMIEICE IHRGEYFGAQ RLQKQQYVQE LKNEMAITMD KIKLLQLHCR KLMGQDLYSC 120 SVEELKEITT KIEKSLTIVR SRKTKLNEDK IEKLKAEIVA QREVLNEKSS LRQMFEEHPL 180 CIQSRSLESE KSAPSCNCGN MNLSDVETDL SIGLPQSRV*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC189309 | 4e-94 | AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence. |