PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00050975001

Common Name

GSBRNA2T00050975001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 210aa MW: 23619.1 Da PI: 5.3757

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00050975001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	78	138	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ GSBRNA2T00050975001 78 RNRWTPTSTQLQILESIYEEkSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 138 89***************9899**********************************97 PP
2	Wus_type_Homeobox	96.3	2.4e-31	77	140	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++ tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq GSBRNA2T00050975001 77 TRNRWTPTSTQLQILESIYEEKSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 140 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.6E-17	71	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.013	74	139	IPR001356	Homeobox domain
SMART	SM00389	1.5E-13	76	143	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-19	76	145	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-18	78	138	IPR001356	Homeobox domain
CDD	cd00086	3.75E-14	78	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MERENQNGAY VGRGVMTEEQ METLRKQIAV YAVICEQLAL LHNSLSSFQP LSSGINPNGD 60 GYFNPMVASS SAQRISTRNR WTPTSTQLQI LESIYEEKSG TPNRRRIREI ATELSEHGQI 120 TETNVYNWFQ NRRARSKRKQ PQTMATTDQA EDAAVTTDEK RSCGDSGGFE SYEHILFPSP 180 DLGIEHLLSR GELSGDFNSY TIADIKYKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00050975001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	0.0	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013717605.1	1e-157	WUSCHEL-related homeobox 14-like isoform X2
Swissprot	Q9LM84	1e-115	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A078JGS0	1e-155	A0A078JGS0_BRANA; BnaCnng49040D protein
STRING	Bo5g030590.1	1e-155	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-117	WUSCHEL related homeobox 14

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]