PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00050743001 | ||||||||
Common Name | GSBRNA2T00043900001, GSBRNA2T00050743001, GSBRNA2T00054087001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 313aa MW: 35345.3 Da PI: 8.4117 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 1.9e-14 | 83 | 159 | 11 | 95 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++ l++p f+++h +gk +++ t tl++ ++W+v + ++ lt+GWkeF++a++L+ gD+v+Fkl+g++ f +v+ GSBRNA2T00050743001 83 FQTH-LTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 159 5566.9**********7555.56668888874777*****99..7777....************************998888..665 PP | |||||||
2 | B3 | 56.6 | 4.8e-18 | 199 | 293 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 fk++++ ++ +++ l lp + + ++ke+ k+ +l + +g+ W+v ++++ ++g y+++ GW++F+ +n+ gD++vF ++g+ ++ GSBRNA2T00050743001 199 FKAEVTDSNVREDKLNLPVGATGCNALNKEC-KKAKLVNIEGKAWNVSMRFNESGGFYYIK-GWRKFCAENKCHIGDSFVFNVVGDGNTL 286 78999999999999*******9888999877.6*****************99999999998.***********************98777 PP .EEEEE- CS B3 92 lvvkvfr 98 +++ v++ GSBRNA2T00050743001 287 PLMCVCS 293 9988887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 67 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-20 | 69 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 72 | 164 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.23E-15 | 73 | 161 | No hit | No description |
SMART | SM01019 | 3.0E-18 | 75 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-9 | 85 | 156 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-15 | 197 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-16 | 198 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.435 | 198 | 295 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.88E-14 | 198 | 286 | No hit | No description |
SMART | SM01019 | 2.5E-15 | 199 | 295 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-16 | 199 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MVPIPYLKSP NQTRFPLIFG KPFPLSTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP 60 IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV 120 IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH 180 DHQNNRTEAR FSYSWDYCFK AEVTDSNVRE DKLNLPVGAT GCNALNKECK KAKLVNIEGK 240 AWNVSMRFNE SGGFYYIKGW RKFCAENKCH IGDSFVFNVV GDGNTLPLMC VCSPSKECLK 300 SAGDIASSSR VN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00050743001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189599 | 1e-167 | AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102011.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009102349.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009110111.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009110645.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
Refseq | XP_009131313.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X2 | ||||
TrEMBL | A0A078H3S7 | 0.0 | A0A078H3S7_BRANA; BnaA01g19720D protein | ||||
STRING | Bra036483.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16565 | 3 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31690.1 | 6e-65 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|