PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00050606001 | ||||||||
Common Name | GSBRNA2T00050606001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 196aa MW: 21686.1 Da PI: 5.2822 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.1e-19 | 77 | 137 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +p+ +++ee++ +l ++ +++V++WFqNrRa+ k+ GSBRNA2T00050606001 77 RHRWTPTSMQLQILESIYEEgSGTPKPQRIEEITLELsqhgQVMDKNVYNWFQNRRARSKR 137 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 102 | 4.3e-33 | 76 | 139 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe++y++G tP+ ++i++it eL+++G+++dkNV++WFQNr+aR+++kq GSBRNA2T00050606001 76 HRHRWTPTSMQLQILESIYEEGSGTPKPQRIEEITLELSQHGQVMDKNVYNWFQNRRARSKRKQ 139 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.14E-16 | 70 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-15 | 71 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.135 | 73 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-12 | 75 | 142 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.5E-17 | 77 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.49E-12 | 77 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDGGSQNGAY DGRVMTEEQM EILSKQIAIY AAICGQLVSL HESLSSKLPL SSGVDPTGGG 60 YFDSMGASPS TYKISHRHRW TPTSMQLQIL ESIYEEGSGT PKPQRIEEIT LELSQHGQVM 120 DKNVYNWFQN RRARSKRKQP QAMTTTTVQT VDAVAATEER SYGDSGGFES YDHILFPSTD 180 FGIEHLLDGG IFRER* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00050606001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013597183.1 | 1e-143 | PREDICTED: WUSCHEL-related homeobox 14-like | ||||
Swissprot | Q9LM84 | 4e-94 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | A0A078GZH2 | 1e-143 | A0A078GZH2_BRANA; BnaC07g15200D protein | ||||
TrEMBL | A0A3P6EUG7 | 1e-143 | A0A3P6EUG7_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g061410.1 | 1e-142 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 3e-94 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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