PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00050606001

Common Name

GSBRNA2T00050606001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 196aa MW: 21686.1 Da PI: 5.2822

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00050606001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.1e-19	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +p+ +++ee++ +l ++ +++V++WFqNrRa+ k+ GSBRNA2T00050606001 77 RHRWTPTSMQLQILESIYEEgSGTPKPQRIEEITLELsqhgQVMDKNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	102	4.3e-33	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe++y++G tP+ ++i++it eL+++G+++dkNV++WFQNr+aR+++kq GSBRNA2T00050606001 76 HRHRWTPTSMQLQILESIYEEGSGTPKPQRIEEITLELSQHGQVMDKNVYNWFQNRRARSKRKQ 139 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.14E-16	70	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-15	71	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.135	73	138	IPR001356	Homeobox domain
SMART	SM00389	7.8E-12	75	142	IPR001356	Homeobox domain
Pfam	PF00046	7.5E-17	77	137	IPR001356	Homeobox domain
CDD	cd00086	2.49E-12	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDGGSQNGAY DGRVMTEEQM EILSKQIAIY AAICGQLVSL HESLSSKLPL SSGVDPTGGG 60 YFDSMGASPS TYKISHRHRW TPTSMQLQIL ESIYEEGSGT PKPQRIEEIT LELSQHGQVM 120 DKNVYNWFQN RRARSKRKQP QAMTTTTVQT VDAVAATEER SYGDSGGFES YDHILFPSTD 180 FGIEHLLDGG IFRER*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00050606001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013597183.1	1e-143	PREDICTED: WUSCHEL-related homeobox 14-like
Swissprot	Q9LM84	4e-94	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A078GZH2	1e-143	A0A078GZH2_BRANA; BnaC07g15200D protein
TrEMBL	A0A3P6EUG7	1e-143	A0A3P6EUG7_BRAOL; Uncharacterized protein
STRING	Bo7g061410.1	1e-142	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	3e-94	WUSCHEL related homeobox 14

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]