PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00050346001
Common NameGSBRNA2T00050346001, GSBRNA2T00105623001, GSBRNA2T00114402001, LOC106370405
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 377aa    MW: 43039.3 Da    PI: 7.3787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00050346001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07219241123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cgk F+r  nL+ H+r H
  GSBRNA2T00050346001 219 HYCQICGKGFKRDANLRMHMRAH 241
                          68*******************99 PP
2zf-C2H212.30.00051340355621
                          TTEEESSHHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHir 21 
                          Cg++Fsrk+ L++H +
  GSBRNA2T00050346001 340 CGTRFSRKDKLMSHVS 355
                          **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.92E-6217244No hitNo description
PROSITE profilePS5015712.632219246IPR007087Zinc finger, C2H2
SMARTSM003550.0028219241IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-6219246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0025220239No hitNo description
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SMARTSM00355190270303IPR015880Zinc finger, C2H2-like
SMARTSM0035555308330IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNQEEHMNQG RYIMSQVEGS MSCFSETNSS STIYMNPMMA ATRSSGEDNG IQLSLLLNLS  60
TIQDKVHEIQ SLVNFFMISP NNNNQSSEST SSLAAANVES LVQDIITAAS SMMLTCQQLQ  120
SSTNSNSNID TNQTADAMVM EFSQDFDPDR DFMGESSINI LDVQERRHVS FLDQTTQNLD  180
WYGTETTNPK KDIHRSKSRL GNYEIVELSV EDLLAKYTHY CQICGKGFKR DANLRMHMRA  240
HGDEYKTREA LISPTSRDKN VEYSSMRYYY SCPHQGCRWN QRHEKFQPLK SVICAKNHYK  300
RSHCPKIYMC RRCNVKHFSV LSDLRTHEKH CGDIKWVCSC GTRFSRKDKL MSHVSLFSGH  360
SPAHEPSQQQ PPMITP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.214880.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00050346001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665869.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A078CCG30.0A0A078CCG3_BRANA; BnaA04g16510D protein
STRINGBra002438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-169C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]