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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00049992001 | ||||||||
Common Name | GSBRNA2T00049992001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 29171.7 Da PI: 6.5111 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.3 | 4.3e-11 | 181 | 221 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq GSBRNA2T00049992001 181 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 221 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.123 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 173 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 176 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-12 | 177 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.36E-12 | 180 | 225 | No hit | No description |
Pfam | PF00010 | 1.9E-8 | 181 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDVFVDGELE SLLGMFNFDQ CSSSKEEKPQ DEMLSLSSLY NGHLHHHHQN DVLSSDQHAF 60 LIPDMFPFGV MPGGNLPTML DSWDQNHFQE TATLKRKLLN VENPHNTNSN CDVTRHELVK 120 PKKKQRVNQE SNTADESNTN WRDGQSQSNS SDDEKASVTS VKGKTRATKG TATDPQSLYA 180 RKRREKINER LKTLQNLVPN GTKVDISTML EEAVHYVKFL QLQIKLLSSD ELWMYAPLAY 240 NGLDMGFHHN LLSRLM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 185 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00049992001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085436 | 0.0 | AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013682015.1 | 0.0 | transcription factor bHLH54 | ||||
Swissprot | Q8LEG1 | 1e-161 | BH054_ARATH; Transcription factor bHLH54 | ||||
TrEMBL | A0A078FI53 | 0.0 | A0A078FI53_BRANA; BnaC03g58100D protein | ||||
STRING | Bo3g142890.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4132 | 22 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 1e-153 | root hair defective 6-like 4 |