PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00049955001 | ||||||||
Common Name | GSBRNA2T00049955001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 140aa MW: 16444.8 Da PI: 10.6899 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.7 | 2.2e-23 | 6 | 86 | 2 | 79 |
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk 79 p+GfrFhPtdee++ +yL++k ++g++++++e+i++vdiy+++Pw+Lp++ ++ ++ wyfF ++d+ky + krk ++t+ GSBRNA2T00049955001 6 PVGFRFHPTDEEIIGYYLRAKnMDGNTTHVNEFINTVDIYSFDPWELPSNSSSirKDYVWYFFGRKDNKYVHTKRKVKTTN 86 89*****************99455566888889***************53333225559************9999988775 PP | |||||||
2 | NAM | 21.8 | 5.2e-07 | 92 | 131 | 60 | 99 |
NAM 60 fFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 Fsk++ ky++g r++r+ +sg+Wk+tg + ++++ + ++ GSBRNA2T00049955001 92 LFSKKKDKYNRGGRQSRKKSSGFWKKTGVTVNMINPTVQQ 131 69***************************99988864444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-24 | 3 | 85 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.6 | 5 | 139 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-14 | 6 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.5E-5 | 93 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MVNSHPVGFR FHPTDEEIIG YYLRAKNMDG NTTHVNEFIN TVDIYSFDPW ELPSNSSSIR 60 KDYVWYFFGR KDNKYVHTKR KVKTTNITEE PLFSKKKDKY NRGGRQSRKK SSGFWKKTGV 120 TVNMINPTVQ QPMTRKKKK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00049955001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482388.1 | 2e-38 | PREDICTED: NAC domain-containing protein 5-like isoform X2 | ||||
Swissprot | O81914 | 9e-35 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | A0A078FEP5 | 4e-98 | A0A078FEP5_BRANA; BnaC03g58370D protein | ||||
TrEMBL | A0A0D3BIK6 | 4e-98 | A0A0D3BIK6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g143160.1 | 6e-99 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 4e-37 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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