PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049931001
Common NameGSBRNA2T00049931001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 72aa    MW: 8070.11 Da    PI: 8.6769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049931001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.4e-103861326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                         + +C+++  +G Ck G++C+F H+
  GSBRNA2T00049931001 38 QTICPHYNMFGLCKLGPTCRFDHS 61
                         579********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-63563IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-43562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8543563IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-73861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-44062IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MSGQEIPERS KQQNSMTRSP REPPCDLNEN GLPVRPNQTI CPHYNMFGLC KLGPTCRFDH  60
STKPPSSDRK Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049931001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325437e-96AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891416.14e-18zinc finger CCCH domain-containing protein 13
SwissprotQ3ECU84e-16C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
SwissprotQ9STM42e-15C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A078FFI23e-45A0A078FFI2_BRANA; BnaC06g13320D protein
STRINGBo6g064850.12e-45(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.12e-18C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]