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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00049877001 | ||||||||
Common Name | GSBRNA2T00049877001, GSBRNA2T00099274001, GSBRNA2T00102203001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 31893.2 Da PI: 7.0882 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.8e-10 | 201 | 242 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq GSBRNA2T00049877001 201 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 242 69******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.237 | 192 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-12 | 194 | 246 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-12 | 194 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-13 | 196 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-12 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-7 | 201 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MALLNDHPNE PNYIAKQNSS SSEDLSSPEN YGLASSSSTM NSDHQQNHQG IVFYPSGESV 60 ENHNSLLDFN GSSFLNFDNN NHHESFPHPT ISCGGGFSFL EGNNMSYGFT NWSQHHMDII 120 SPRPIETPGI NQGHKEWLYS DSTAVTTGSR DESLSPKSAG NKRSYTGESI QPPSKKPRSG 180 ANGKAKPKPI TPPKDPQSLA AKNRRERISE RLKILQELVP NGTKVDLVTM LEKAISYVKF 240 LQLQVKVLAT DEFWPAQGGK APDISQVRDA IDAILSSSQR DKNSTPITNK * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00049877001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105207.1 | 0.0 | PREDICTED: transcription factor bHLH83 | ||||
Swissprot | Q9C707 | 1e-146 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A078FFF7 | 0.0 | A0A078FFF7_BRANA; BnaC06g13020D protein | ||||
STRING | Bo6g101000.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 1e-147 | ROOT HAIR DEFECTIVE6 |