PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049541001

Common Name

GSBRNA2T00049541001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 286aa MW: 33300.6 Da PI: 6.0621

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049541001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	106.1	2.8e-33	27	136	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........XTTSEEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........kekiweFkh 83 Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+Y ++ +++++++s + + weF + GSBRNA2T00049541001 27 FLTKTFEMVDDPNTNHIVSWNRGGISFVVWDPHSFSANILPLYFKHNNFSSFVRQLNTYFWRTSTKRSASSYCemmgfrkiEAERWEFMN 116 9********************************************************999999888775557777765449*** PP SXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 84 ksFkkgkkellekikrkkse 103 + F g+++ll++ikr++s+ GSBRNA2T00049541001 117 DGFLMGQRDLLKSIKRRTSS 136 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.81E-30	23	133	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.2E-44	23	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.2E-33	24	133	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-28	27	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-16	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-16	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-16	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0009644	Biological Process	response to high light intensity
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEPSSSSRAW SMPVPMKGLQ EPGPCPFLTK TFEMVDDPNT NHIVSWNRGG ISFVVWDPHS 60 FSANILPLYF KHNNFSSFVR QLNTYFWRTS TKRSASSYCE MMGFRKIEAE RWEFMNDGFL 120 MGQRDLLKSI KRRTSSSAPP SLHHSQGDPC VELRQERHVL MMEISRLRQQ EQRARGYIQA 180 MEQRINGAEK KQRHMMSFLR RAVQNPALLQ QLLEQQRKEL EEASMDQVKP ETVEHVSELE 240 ALALEMQGHG RQRTEEVEKE LDDGFWEELL MNKDEGEEED NVNTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	2e-21	27	136	20	123	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	LKSIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049541001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237304	0.0	AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018510400.1	0.0	PREDICTED: heat stress transcription factor A-7b isoform X1
Swissprot	Q9M1V5	1e-146	HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBL	A0A078FAR0	0.0	A0A078FAR0_BRANA; BnaA09g40360D protein
TrEMBL	M4CU45	0.0	M4CU45_BRARP; Uncharacterized protein
STRING	Bra007739.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14836	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G63350.1	1e-141	HSF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]