PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049503001
Common NameGSBRNA2T00049503001, LOC106345273
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 421aa    MW: 48196 Da    PI: 4.8391
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049503001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.12.6e-25206264155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk....vkgLtlehvkSHLQkYRl 55 
                          kpr+ WtpeLH+ F +ave++GG e+A+Pk+il++m+     +gLt+++v+SHLQkYRl
  GSBRNA2T00049503001 206 KPRMTWTPELHQLFEKAVEKMGGVEQAVPKQILKCMQeekdAEGLTRNNVASHLQKYRL 264
                          79**********************************7333368***************8 PP
2Response_reg58.15.2e-20441481105
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          +++vd +p  + l+++++++  y +v+ +++g ea++ l   ++++Dl++ D   p+++Gle+lk+i +e  +lpi++++ + +++++ e
  GSBRNA2T00049503001  44 IVLVDSDPESLCLMKNLMTQYSY-QVRDFKNGAEAIAFLmmSKHEIDLVIWDFHVPEINGLEALKTIGKEM-DLPIVIMSHEHKKKTVME 131
                          689********************.*************99556666**********************6644.7***************** PP

                          HHHTTESEEEESS--HH CS
         Response_reg  89 alkaGakdflsKpfdpe 105
                            k+G   fl Kp+++e
  GSBRNA2T00049503001 132 STKRGSCNFLLKPVSKE 148
                          *************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.5E-2641190No hitNo description
SuperFamilySSF521721.32E-2341165IPR011006CheY-like superfamily
SMARTSM004481.1E-1342153IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.54843158IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-1744148IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.11E-1646153No hitNo description
PROSITE profilePS5129411.519203267IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-24204265IPR009057Homeodomain-like
SuperFamilySSF466892.69E-14205265IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-21206265IPR006447Myb domain, plants
PfamPF002492.8E-9208263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSVSSNILKE NSRDLLREEE PGDDEVEFPI NDEDEDFSIT SIRIVLVDSD PESLCLMKNL  60
MTQYSYQVRD FKNGAEAIAF LMMSKHEIDL VIWDFHVPEI NGLEALKTIG KEMDLPIVIM  120
SHEHKKKTVM ESTKRGSCNF LLKPVSKEII AVLWQHVYRK RVSIYSVESN PEENVGLDQD  180
DIALYQTNSN SGEQTSSYQK EDKNKKPRMT WTPELHQLFE KAVEKMGGVE QAVPKQILKC  240
MQEEKDAEGL TRNNVASHLQ KYRLNSGKKS SMIQETREDS EWRNAGPNTA LTASKPLPNS  300
IFGLHTRVPY FANDQDARNG PMQYPSTNYF TMDNGHFMTN SFANLPYTDS FHQQQQQQFQ  360
NQQFSHSSLQ LPSVITKQEF PYVSAALENP DLIANQNSLY MDLGDYLQEG LSDFDKTNRY  420
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in mature pistil tip. Also detected in the shoot apical meristem as well as vascular tissue and hydathodes of the leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049503001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553350.0AC155335.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639954.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ81e-124ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLA0A078FEL10.0A0A078FEL1_BRANA; BnaA09g40030D protein
STRINGBra041027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.16e-98response regulator 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]