PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049481001

Common Name

GSBRNA2T00049481001, LOC106363662

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 299aa MW: 34186.9 Da PI: 7.7147

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049481001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.9	3.8e-32	131	189	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v++s+fprsYYrCt + C+vkk+vers +d++ v++tYeg+H+h+ GSBRNA2T00049481001 131 LDDGYKWRKYGQKPVRNSPFPRSYYRCTISCCNVKKRVERSFTDQSSVITTYEGQHTHP 189 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-32	117	191	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	124	191	IPR003657	WRKY domain
PROSITE profile	PS50811	30.159	126	191	IPR003657	WRKY domain
SMART	SM00774	1.9E-35	131	190	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	132	189	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEKTGAGMTF SDLGQRRADP SSLSDSSWER YPVGFMELLG VHHQDSSRYA LTHMPPMQLT 60 ATPNPSSSIS YALCEAVTGE ESNRYYQKLE NDDEEQKHKR NKRFKSTRSS EQTKMKAPRV 120 SFITKSQVNN LDDGYKWRKY GQKPVRNSPF PRSYYRCTIS CCNVKKRVER SFTDQSSVIT 180 TYEGQHTHPR PLILSRQGSF GSDGSASEAY FDLTPTLPPQ LHQLFDYNNH HQQQNQELSP 240 FGTEYLSRQE KEFNHDGGDH YHVIKPRRTQ DLLDGAGLVK DNGLLQDVVP AHIINEEY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	124	191	10	77	Probable WRKY transcription factor 4
2lex_A	3e-24	124	191	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049481001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC172877	0.0	AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013658824.1	0.0	probable WRKY transcription factor 68
Swissprot	Q93WV6	1e-99	WRK68_ARATH; WRKY transcription factor 68
TrEMBL	A0A078FDM0	0.0	A0A078FDM0_BRANA; BnaA09g39820D protein
STRING	Bra007674.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15068	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62340.1	4e-96	WRKY family protein

Link Out ? help Back to Top
Entrez Gene	106363662

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]