PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00049448001
Common NameGSBRNA2T00049448001, GSBRNA2T00127059001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 293aa    MW: 33001 Da    PI: 7.7523
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00049448001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.1e-3222125199
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+kv tpsdv+k++rlv+pk++ae++     ++ ++++  l +ed++g sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d
  GSBRNA2T00049448001  22 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnSSTNNKGLLLDFEDRTGSSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRD 111
                          89***************************99556668889************************************************87 PP

                          SSSEE..EEEEE-S CS
                   B3  86 grsefelvvkvfrk 99 
                            ++ +l++ ++r+
  GSBRNA2T00049448001 112 PCNKDKLYIDWRRR 125
                          44777799999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4211131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-3220128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-2521114No hitNo description
SMARTSM010196.1E-2422126IPR003340B3 DNA binding domain
PROSITE profilePS5086314.35322126IPR003340B3 DNA binding domain
PfamPF023623.7E-2922125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNQENKKPLE EASTSMEREN MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DNSSTNNKGL  60
LLDFEDRTGS SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR DPCNKDKLYI  120
DWRRRPKIPD HHQFAGAMFP RFYSFPHPQM PTSFESSHNL YHHRFQRDLG IGYYPTAVIE  180
SVPVIMQRRE AQVANMVSSR GEKRLRLFGV DMECGGGGGG SVNSTEEESS SSGGSMSRGG  240
VSMAGVGSLL QLRLVSSDDE SLVAMEGASV DEDHHLFTTK KGKSSLSFDL DI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-61171283116B3 domain-containing transcription factor NGA1
5os9_B2e-61171283116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00049448001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728770.0AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708442.20.0B3 domain-containing transcription factor NGA2-like
SwissprotQ9M2681e-168NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A078FH330.0A0A078FH33_BRANA; BnaA09g39540D protein
STRINGBra007646.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-147B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]