PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00049282001 | ||||||||
Common Name | GSBRNA2T00049282001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 27894.7 Da PI: 8.9619 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs+ L H+r+H GSBRNA2T00049282001 161 HECSICKAEFSSGQALGGHMRRH 183 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.0E-9 | 109 | 183 | No hit | No description |
Pfam | PF13912 | 1.6E-11 | 109 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.061 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.575 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-4 | 158 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-12 | 160 | 185 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 161 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 161 | 188 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 163 | 183 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MTSVHEETRL VLLIKGKRTK RQRSVSPHMN AEAMSSVCKE ERSLEAREGV GEIEFRGATD 60 EDQDMANCLM LLSQGHKSNT SGDPLLTQKI GFLSNKKPVA SLGLGLNGVY QCKTCDKSFH 120 SFQALGGHRT SHKKPKLGAI ILKCGEKKSA SAVKTKQEKT HECSICKAEF SSGQALGGHM 180 RRHRGLTLNA NANSTTRTEI SSSHHQESIR EKNFIELDLN LPAPEDEPKF VFASKDQILL 240 FAAAASNSLI DCHH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00049282001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 0.0 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130761.1 | 0.0 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A078F9Y9 | 0.0 | A0A078F9Y9_BRANA; BnaA03g00910D protein | ||||
STRING | Bra005766.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 1e-128 | C2H2 family protein |
Publications ? help Back to Top | |||
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