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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00048980001 | ||||||||
Common Name | GSBRNA2T00048980001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 25312.4 Da PI: 7.2157 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0015 | 111 | 133 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF + L H +H GSBRNA2T00048980001 111 YQCQTCDKSFHSFQALGGHRASH 133 9*********9988888887776 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00069 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs+ L H+r+H GSBRNA2T00048980001 147 HECSICKAEFSSGQALGGHMRRH 169 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.64E-8 | 110 | 169 | No hit | No description |
Pfam | PF13912 | 4.9E-12 | 110 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.049 | 111 | 133 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.45 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 113 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 144 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-12 | 146 | 171 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 147 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.307 | 147 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 149 | 169 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTSVHEETRL VLLVKGKRTK RQRSASPHMN AEAVSGVCSE EPSLEAREEG AGEVEFQGAT 60 EEDQDMANCL MLLSQGHKAN GSGDHSSTHK IDFLCKKKPV ASLGLGLEGV YQCQTCDKSF 120 HSFQALGGHR ASHKKPKLGE NKPEKTHECS ICKAEFSSGQ ALGGHMRRHR GLIVNANATS 180 SHHQESIRPK NFLELDLNLP APEDESKFVF ASKDQIILFT TASNSLIDCH H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00048980001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 1e-119 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013721467.1 | 1e-164 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A078FDI2 | 1e-170 | A0A078FDI2_BRANA; BnaA03g46860D protein | ||||
STRING | Bra009525.1-P | 1e-158 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 1e-120 | C2H2 family protein |
Publications ? help Back to Top | |||
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