PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048941001
Common NameGSBRNA2T00048941001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 348aa    MW: 37933.1 Da    PI: 10.4913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048941001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31278336259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  GSBRNA2T00048941001 278 SDEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERAPDDAMMLIVTYEGDHNHA 336
                          69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-15241275IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-33265337IPR003657WRKY domain
PROSITE profilePS5081129.895272338IPR003657WRKY domain
SuperFamilySSF1182909.42E-26275336IPR003657WRKY domain
SMARTSM007741.2E-37277337IPR003657WRKY domain
PfamPF031061.7E-26279335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTVELIMSSS SYGGGKVKRE EDGGFPAEKG DTALKEAASA GIHGVQEFLK LIGQSQPTEE  60
KQTEITAVTD VAVNSFKKVI SLLGRSRTGH ARFRRGPVTT TKPEEVVVKT EEKPRTTTTT  120
TVVLNRGKTE KHGGSAFRVY CPTPIHRRPP LSHAHHTQTK YGSSSSAPLL PNGKPHQEPP  180
SSTIHFAPSP PVSAANSFMS SHRCETESNQ MSSGFEFTNP SSQFSGSRGK PPLSSASLKR  240
KCSSTPSGRC HCTKKRKSKV KRVIRVPAVS SKMADIPSDE FSWRKYGQKP IKGSPHPRGY  300
YKCSSMRGCP ARKHVERAPD DAMMLIVTYE GDHNHAMVLQ TPHEKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22265337273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238256KRKCSSTPSGRCHCTKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.28610.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048941001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300300.0KF430030.1 Brassica rapa WRKY transcription factor 7 (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288974.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-173WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A078FCC40.0A0A078FCC4_BRANA; BnaA03g46550D protein
STRINGBra019239.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-158WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]