PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048158001
Common NameGSBRNA2T00048158001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 301aa    MW: 33251.9 Da    PI: 9.5778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048158001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.99.2e-1975165194
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f k  + +d+l + r +l+ +f++++g+ k++   +tl  ++g +W+v+l  ++++++  l+kGWkeF+kangLk+g+ ++++l++++e 
  GSBRNA2T00048158001  75 FMKLKLAHDSLIKYRQYLSVPFMRANGMTKPG--LITLVGKDGVKWKVNLYEERSGSSLCLGKGWKEFAKANGLKTGEYFTLELVWENE- 161
                          6778888999999999**********999766..7***************54777777***************************9543. PP

                          ..EE CS
                   B3  91 elvv 94 
                           +++
  GSBRNA2T00048158001 162 IPML 165
                          3555 PP
2B340.83.9e-132112951097
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                            k + l lp +f++++g+kk +  ++tl  ++g +W   l    ++g++  + GW++F++ang+k gD++ + ++++ +++ +v+k+ 
  GSBRNA2T00048158001 211 DVKACTLHLPSEFVTAIGIKKLG--KITLLGKDGMKWWGCL--LSRDGTVAVGIGWRNFCEANGVKLGDSFSLVFINEeEDTGPVFKFS 295
                          456689***********999755..8********9999999..8999999***********************9998879999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1769165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1972168IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-2073167No hitNo description
SMARTSM010196.4E-2675171IPR003340B3 DNA binding domain
PROSITE profilePS5086313.83175171IPR003340B3 DNA binding domain
PfamPF023623.0E-1775165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-15199296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-15200295IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632202297IPR003340B3 DNA binding domain
SMARTSM010194.3E-13202298IPR003340B3 DNA binding domain
PfamPF023623.5E-11211295IPR003340B3 DNA binding domain
CDDcd100172.91E-10215295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNNSETKVKT EADSSSSDHP CPLALVTASN VRKDTQCLRQ DLCPTESNHD GTQGDNNKKK  60
RRGRRPPTSP SQKQFMKLKL AHDSLIKYRQ YLSVPFMRAN GMTKPGLITL VGKDGVKWKV  120
NLYEERSGSS LCLGKGWKEF AKANGLKTGE YFTLELVWEN EIPMLSLVNT ESASDRKQRG  180
EPSKAMEKER STDTSSIVQN RVVTLALETK DVKACTLHLP SEFVTAIGIK KLGKITLLGK  240
DGMKWWGCLL SRDGTVAVGI GWRNFCEANG VKLGDSFSLV FINEEEDTGP VFKFSPNSGN  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048158001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745925.20.0B3 domain-containing protein REM12-like
SwissprotP0CAP46e-91REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078JGZ90.0A0A078JGZ9_BRANA; BnaCnng48570D protein
STRINGBo4g154880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.14e-81B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]