PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048156001
Common NameGSBRNA2T00048156001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 434aa    MW: 47311 Da    PI: 4.804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048156001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018126146323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C  C+k F++   L  H+r H
  GSBRNA2T00048156001 126 CCVCHKKFPSMKALYGHMRFH 146
                          9******************99 PP
2zf-C2H211.10.0012291313123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+ksF++   L  H  +H
  GSBRNA2T00048156001 291 HVCVTCNKSFTSYQALGGHRASH 313
                          79**********99999998887 PP
3zf-C2H214.40.00011358380123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C ksF++   L  H r+H
  GSBRNA2T00048156001 358 HVCNKCQKSFPTGQALGGHKRRH 380
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-674146No hitNo description
PROSITE profilePS501579.43276103IPR007087Zinc finger, C2H2
SMARTSM003554.77698IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-67699IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
PROSITE profilePS501578.559124146IPR007087Zinc finger, C2H2
SMARTSM003551.4124146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
PfamPF139125.6E-4126147IPR007087Zinc finger, C2H2
SuperFamilySSF576676.07E-7290313No hitNo description
SMARTSM003550.37291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452291318IPR007087Zinc finger, C2H2
PfamPF139123.8E-10291315IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
SuperFamilySSF576676.07E-7353380No hitNo description
SMARTSM003550.063358380IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-11358381IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411358380IPR007087Zinc finger, C2H2
PROSITE patternPS000280360380IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDQLSGNKSN CGFSLRRPRS TQEEEQAEDD ERQAKSIDLR EEEEEEEEHE DDDGATSADL  60
EGDEEEEEEE EEEKKHICCA CGKSFTSGKA LGGHKSLHML QTRKISTVRP KMVSAGDERG  120
EFEVDCCVCH KKFPSMKALY GHMRFHPDRG WKGVLPPHHP LGNLSSSTIS TDDDDDDDGD  180
DDDDHWELEN VVDLKESVKV SWTTGKRARR SALKIDESDI DARNLLVLAT TAEAVDLDVV  240
GTSDSLSGEE VVTKKKKKKK RLSEMEKEPS QLEVVVVGGA DEEGGGAREK HVCVTCNKSF  300
TSYQALGGHR ASHNKVKVLD NHHARANGEA LLLGTEAMIT GLASAQGPNT SLSSNGDHVC  360
NKCQKSFPTG QALGGHKRRH WTGPVSSEAA TAVPSAATAP GGASSSQVTE TVQEVKKRKL  420
LEFDLNELPP NEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048156001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893780.0AC189378.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619057.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A078JDQ60.0A0A078JDQ6_BRANA; BnaAnng21010D protein
STRINGBra035609.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]