PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047965001
Common NameGSBRNA2T00047965001, LOC106427742
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 180aa    MW: 20589 Da    PI: 10.721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047965001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000374769123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+++Fs+   L  H  tH
  GSBRNA2T00047965001 47 FECKTCNRRFSSFQALGGHRATH 69
                         89***********9999999988 PP
2zf-C2H215.16.7e-0594116123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC+ Cg+sF +   L  H+r+H
  GSBRNA2T00047965001  94 HKCSRCGQSFGTGQALGGHMRRH 116
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.4E-746116No hitNo description
PfamPF139124.2E-124671IPR007087Zinc finger, C2H2
SMARTSM003550.134769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5754774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.7294121IPR007087Zinc finger, C2H2
SMARTSM003550.03394116IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-1094118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKRERSEYEE SIKNLDIVKC LMILSRTSIV KQIGVNQFTE RNTSNRFECK TCNRRFSSFQ  60
ALGGHRATHK KPKLTVDEKD VKHFTKNYKG THMHKCSRCG QSFGTGQALG GHMRRHRSSM  120
TLEPSQRISP VIPTMPVMKR CSSSKRVLSL DLNLTPLEND LEIIFGKKFF PNIDMKLVV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047965001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723913.11e-131zinc finger protein ZAT11
SwissprotQ9SLD41e-104ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A078JGN41e-130A0A078JGN4_BRANA; BnaCnng48130D protein
STRINGBra030981.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]