PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047574001
Common NameGSBRNA2T00047574001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 175aa    MW: 18828.1 Da    PI: 7.1654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047574001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015171121
                         EEETTTTEEESSHHHHHHHHH CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                         ++C+ C+k+F ++  L  Hi 
  GSBRNA2T00047574001 51 FECEGCKKVFESRQALDGHIC 71
                         89***************9996 PP
2zf-C2H217.41.2e-05108130123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k Fs+   L  H+r+H
  GSBRNA2T00047574001 108 HRCDICSKAFSSGQALGGHMRRH 130
                          79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.4E-45069IPR007087Zinc finger, C2H2
SuperFamilySSF576676.36E-85173No hitNo description
SMARTSM00355865171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.36E-8103130No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4107130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.8E-12108131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887108137IPR007087Zinc finger, C2H2
SMARTSM003550.0066108130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRSHPERQWR GINPPPNHQP TAPPVSVTAE EGQVLANAST TGSSVGVGGR FECEGCKKVF  60
ESRQALDGHI CSAILNLNVD PPPPSAPQEI VDEDDKSKSV MVVSEMNHRC DICSKAFSSG  120
QALGGHMRRH WHKDRKEKKQ ASTGIDLNVP ASTNLPGSSS DTLPESSLDL RLRL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109970.0microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047574001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121152.11e-126PREDICTED: zinc finger protein ZAT2
RefseqXP_013724919.11e-126zinc finger protein ZAT2-like
SwissprotQ9SIJ09e-45ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLA0A078H0S11e-125A0A078H0S1_BRANA; BnaA07g03110D protein
TrEMBLA0A3P6B9B91e-125A0A3P6B9B9_BRACM; Uncharacterized protein
TrEMBLM4CCU61e-125M4CCU6_BRARP; Uncharacterized protein
STRINGBra002027.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-42C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]