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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00047501001 | ||||||||
Common Name | GSBRNA2T00047501001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26235.5 Da PI: 4.3752 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00031 | 187 | 227 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 E+ R d+i++a+ L +++P a K + L +A++Y+k L GSBRNA2T00047501001 187 EQSRKDKIRTALKILESIVPGA------KgNQALLLLDEAIDYLKLL 227 999******************9......5356667899999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.737 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-5 | 187 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-6 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.29E-4 | 187 | 231 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MPLDTRQWDL PPKACFEDMA ARFLPDATEL QAHCLQPPPP FKWSLDKESC GKRFSLSDMR 60 SWCAAAAAAT PHGGAQKGLM ILDQSGNQTR LLQCPFPLTA EPFKLSEEFD ENYGKESEMH 120 EDTEEINALL YSDEEDCESD DEVMSTGHSP YQQVCNKRVS EEIDAPCKRQ KLLDISQEDT 180 GSGLSDEQSR KDKIRTALKI LESIVPGAKG NQALLLLDEA IDYLKLLKQD LNHC* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269|PubMed:16936072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269|PubMed:16936072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00047501001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189207 | 0.0 | AC189207.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I19, complete sequence. | |||
GenBank | AC232526 | 0.0 | AC232526.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB083J11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130451.1 | 1e-158 | PREDICTED: transcription factor SAC51-like | ||||
Refseq | XP_018511717.1 | 1e-158 | PREDICTED: transcription factor SAC51-like | ||||
Swissprot | Q9FMF4 | 4e-84 | SAC51_ARATH; Transcription factor SAC51 | ||||
TrEMBL | A0A078GXU6 | 1e-172 | A0A078GXU6_BRANA; BnaA02g34160D protein | ||||
STRING | Bra031922.1-P | 1e-158 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5546 | 10 | 14 |