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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00047471001 | ||||||||
Common Name | GSBRNA2T00047471001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 42271.3 Da PI: 8.825 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.7e-20 | 182 | 231 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+ ae Aa+a+++a+++++g GSBRNA2T00047471001 182 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 231 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.17E-22 | 182 | 240 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-13 | 182 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-36 | 182 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-32 | 182 | 240 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.106 | 182 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 183 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.68E-27 | 190 | 241 | No hit | No description |
PRINTS | PR00367 | 4.9E-11 | 205 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MCTLKVANQE DNVGKKAEPT TREDDHRTLS DMDQWFYLFP AEDSHLHHRD NALTPPSSSL 60 MPSFSREMEM SAIVSALTHV VSGNVPPHQF VGGGEGTSNS SSSSGQKKRR REVEEGGGGG 120 KSVKAANTLT VDQYFSGGNS SSRVREASSN MSGSGPTYEY TTTTTTNTET SSLNGDQQPR 180 RRYRGVRQRP WGKWAAEIRD PFKAARVWLG TFDNAESAAR AYDEAALRFR GNKAKLNFPE 240 NVKLVRPATT QSVQQTTAVQ TPTQFRNSTS TSTLLPLRPA VDSQPLIQPY NLSYSEMARH 300 QQQFQQHNHQ QTMDLYDQMS FPLRFGYTGD SMMQSTSSSS SHSRPLFSPA AVQPSETGYL 360 QDIQWSPDKT SNHNYNNSSS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 181 | 242 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00047471001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166741 | 0.0 | AC166741.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH080C09, complete sequence. | |||
GenBank | AC189207 | 0.0 | AC189207.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I19, complete sequence. | |||
GenBank | AC234756 | 0.0 | AC234756.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH067G23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013678372.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q9FGF8 | 1e-154 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A078H1I5 | 0.0 | A0A078H1I5_BRANA; BnaA02g34370D protein | ||||
STRING | Bra031903.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9118 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 1e-124 | ERF family protein |