PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00046102001

Common Name

GSBRNA2T00046102001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 268aa MW: 30609.6 Da PI: 9.7839

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00046102001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	100	123	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C ksF+ L +H t H GSBRNA2T00046102001 100 WKCGYCRKSFNEEKFLDQHFDTrH 123 58**************99987777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.6	100	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	123	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGRLKESSPV IPLLLLLLLF PLLLLSQVLG ESESTREGNA PEIHCSRHRS RAAWQIIQDY 60 LTPFVERERY QIPNKCRLHP DNDLYRDQEQ HKVHVDIYEW KCGYCRKSFN EEKFLDQHFD 120 TRHYNLLNTT GTKCLADLCG ALHCDFVLMS SKKGKSKCNP AAAAKNRHLC ESLANTCFPV 180 SQGPAASRLH EHFLRQFCDA HTCTGKTKPF PKGGKKKSGV FYLAVSILTL MLLPLFYLLV 240 FLHQREKRTG TQVLRRIVKT GKKTKPS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.9344	0.0	leaf\| microspore\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00046102001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618249.1	1e-172	PREDICTED: uncharacterized protein LOC106324810
Refseq	XP_022571272.1	1e-172	uncharacterized protein LOC111213729
TrEMBL	A0A078GZ17	0.0	A0A078GZ17_BRANA; BnaA02g33680D protein
STRING	Bo2g165480.1	1e-171	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4371	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-133	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]