PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045902001
Common NameGSBRNA2T00045902001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 419aa    MW: 46845.4 Da    PI: 5.4304
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045902001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.91.6e-99304152373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsev 87 
                          ++lLl+cA+a++s+d++la++lL+ l+++aspdg +++qRl++ f++AL +r +++ ++l++++ ++  +++ ++++++++++l  f ++
  GSBRNA2T00045902001  30 EQLLLHCATAIDSNDAALAHQLLWVLNNIASPDGdSSTQRLTSAFVRALLSRAVSKIPTLFSTFgNTVFQPPADEIHRFSVVELagFIDL 119
                          79********************************779***************************877778888899999999999***** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgv 174
                          +P+++f++++aN+aIl aveg ++vHi+D+++++++Q p+L++a+a++ ++pp l++T+v+s++++    + ++e +g++L +fA++ ++
  GSBRNA2T00045902001 120 TPWHRFGFIAANEAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMATKLNKPPLLKLTVVSSASNFppfINISYEDLGSKLVNFATSRNI 209
                          **************************************************************999999999******************* PP

                 GRAS 175 pfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesF 253
                          +++f+++   +++ +++l l++Lr+ p   +Eal+Vn++++l +++de+++ +s      r+ +L++++sl+P++v+++e++ad++se++
  GSBRNA2T00045902001 210 EMQFTIIpstYSDGFSSL-LQHLRMYPtsyNEALVVNCHMMLRYIPDETLTPSSpsslsLRNVFLNQLRSLNPTMVTLIEEDADLTSENL 298
                          ******988666777777.99999999999****************9998777666666899**************************** PP

                 GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                          ++r+ +a++y++  fd++++ +   se+r+ +E+e ++++i+nvva+eg er+er+et+++W er+++  F+ v+++e+aa++ k++l +
  GSBRNA2T00045902001 299 VTRLRSAFNYFWIPFDTTDTFM---SEQRRLYEAE-ISWKIENVVAKEGVERVERTETKGRWLERMRDNDFGGVRVREEAASDLKAMLGE 384
                          *********************7...9*********.****************************************************** PP

                 GRAS 344 vk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                          ++ ++g++ +++++slvl+Wk++++v++++W
  GSBRNA2T00045902001 385 HAvGWGMKKDDDDESLVLTWKGHSVVFATVW 415
                          ******************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.4363395IPR005202Transcription factor GRAS
PfamPF035145.5E-9730415IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MTRTGIISPT RFPSLKSQRC GSGGDASFME QLLLHCATAI DSNDAALAHQ LLWVLNNIAS  60
PDGDSSTQRL TSAFVRALLS RAVSKIPTLF STFGNTVFQP PADEIHRFSV VELAGFIDLT  120
PWHRFGFIAA NEAILTAVEG YSTVHIVDLS LTHCMQIPTL IDAMATKLNK PPLLKLTVVS  180
SASNFPPFIN ISYEDLGSKL VNFATSRNIE MQFTIIPSTY SDGFSSLLQH LRMYPTSYNE  240
ALVVNCHMML RYIPDETLTP SSPSSLSLRN VFLNQLRSLN PTMVTLIEED ADLTSENLVT  300
RLRSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM  360
RDNDFGGVRV REEAASDLKA MLGEHAVGWG MKKDDDDESL VLTWKGHSVV FATVWVPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-522441728420Protein SHORT-ROOT
5b3h_E1e-522441728420Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045902001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115681.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A078GZH70.0A0A078GZH7_BRANA; BnaAnng03920D protein
STRINGBra036041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54452750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]