PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045527001
Common NameGSBRNA2T00045527001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 555aa    MW: 62800.9 Da    PI: 8.0414
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045527001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix895.2e-2855139187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ +++++  k+plWeevs+km e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  GSBRNA2T00045527001  55 RWPRQETLALLKIRSDMGIAFGDATVKGPLWEEVSRKMGELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 139
                          8********************************************************************975544..6*******85 PP
2trihelix103.71.3e-32366451187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k e+ aLi++r++++++++++  k+plWe++s+ mr+ gf+r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a
  GSBRNA2T00045527001 366 RWPKVEIEALIKLRTNLDSKYEENGPKGPLWEDISAGMRRLGFNRNSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLDA 451
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.03152114IPR001005SANT/Myb domain
PfamPF138374.4E-1754140No hitNo description
CDDcd122032.13E-2154119No hitNo description
PROSITE profilePS500906.95754112IPR017877Myb-like domain
PROSITE profilePS500907.05359423IPR017877Myb-like domain
SMARTSM007170.0044363425IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-4363422IPR009057Homeodomain-like
CDDcd122038.74E-26365430No hitNo description
PfamPF138373.0E-22365452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MMQQGGSTTT SAATETVPLQ HNESAATEAA AATSAAVGAF EVSEEMSDRG FGGNRWPRQE  60
TLALLKIRSD MGIAFGDATV KGPLWEEVSR KMGELGYIRN AKKCKEKFEN VYKYHKRTKE  120
GRTGKSEGKT YRFFDQLEAL ETHATSSSHH HQPQSQPHNN SSMFSTPPPV TTVIPPTRNI  180
TPSFPNISGD FLSDNSTSSS SSYSTSSDVE VGDTKTTTTR KKKRKRKWKE FFERLMKQVV  240
GKQEELQRKF LEAVEKREHE RMVREESWRV QEIARINREH EILAQERSMS AAKDAAVTAF  300
LQKFSEKPNP QCQLSTTTSR RHSSKRLKRH LLPLLPLLPL LSHTMKTDNG DQNMTPVSAG  360
ALSSSRWPKV EIEALIKLRT NLDSKYEENG PKGPLWEDIS AGMRRLGFNR NSKRCKEKWE  420
NINKYYKKVK ESNKKRPEDS KTCPYFHQLD ALYRERNKFH TNNNVASSSS TSGLVKPDNS  480
VPLMVQPEQQ WPPVTATTVG ATVKPDQHPP QPLDQNFDDE EGTDQEAYDD EEDDEENQEE  540
EGGEFELVPS NNKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226KKKRKRK
2221226KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045527001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892031e-164AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693759.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-145TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A078JF430.0A0A078JF43_BRANA; BnaCnng46430D protein
STRINGBra008285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]