PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045302001
Common NameGSBRNA2T00045302001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 449aa    MW: 50420.9 Da    PI: 7.6315
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045302001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.9e-102643011954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          F+   ++yp   ++e LAk++gLt++qV++WF N R +
  GSBRNA2T00045302001 264 FNHflHPYPRDLDKEMLAKQTGLTKSQVSNWFINARVR 301
                          5544589*****************************87 PP
2BELL105.63.2e-34143213272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          rqelq k+akL+s++e+V++ Ykqy++q+qtvissFe+ aglgsa++Yt++Al++iS++Fr++k++i+ qi
  GSBRNA2T00045302001 143 RQELQLKRAKLISMVEKVEQIYKQYHDQMQTVISSFEQEAGLGSANSYTHMALQTISKKFRAVKNMICLQI 213
                          79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.6E-4479211IPR006563POX domain
PfamPF075261.1E-3290209IPR006563POX domain
PROSITE profilePS5007112.066242305IPR001356Homeobox domain
SMARTSM003892.3E-9245309IPR001356Homeobox domain
CDDcd000867.42E-12245306No hitNo description
SuperFamilySSF466892.95E-17246312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27248311IPR009057Homeodomain-like
PfamPF059205.0E-18262301IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAVFFQGETE MREPSSDLFM VNLNPSPDQT MTINAHNNHF YNLCFAPQQH PQRMNKYEVL  60
DHIEQANCSA ISTVSNGRVT QSFRALAPTY LRVAQELLNE IVHVGHGSRG AKQEQQMNNE  120
SATYGLYNGV GNINGGPKPG VCRQELQLKR AKLISMVEKV EQIYKQYHDQ MQTVISSFEQ  180
EAGLGSANSY THMALQTISK KFRAVKNMIC LQIKRINNLL GEKECEGVSL AKQLGKMPDN  240
HSNAWRPQRG LPETAVSVLR AWLFNHFLHP YPRDLDKEML AKQTGLTKSQ VSNWFINARV  300
RVWKPMVEEM YLEEMNIEES RKGGNLSEHG NKGSSSKQLC NNTTSDESSN LILPAFHQGF  360
IENETSMQNS FSSCSVMTFG KQHVNQAKLI QFNGGFENYH AMVGNGVSLS LGMPHSCDQS  420
FNNIQFGSTS NETKISGIYP SLTYQNMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16251309563Homeobox protein Meis2
3k2a_B1e-16251309563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045302001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747083.10.0BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLA0A078GYM00.0A0A078GYM0_BRANA; BnaA04g15670D protein
TrEMBLA0A3P6CTZ70.0A0A3P6CTZ7_BRACM; Uncharacterized protein
STRINGBra034335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]