PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044772001
Common NameGSBRNA2T00044772001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 245aa    MW: 28095.6 Da    PI: 4.8238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044772001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-125799754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           Er+RR+++N++++ Lr+++P+      +Kl+Ka+i++  ++Y+++L
  GSBRNA2T00044772001 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASIVKDSIDYMQKL 99
                         57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1965099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-105399No hitNo description
SuperFamilySSF474592.22E-1654120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1656117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-105799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEDLEDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASIVK DSIDYMQKLI DQERRLEAEI RELESRSVLL  120
ENPIKDYDCI NNFLENQQQD LLDNNVTRSK KSRQMDYNTS GSSVAGLHNQ SLIEVLEMKV  180
TWMGERTVVV CITCSKRRET MLQLCKVLES LNLNIVTTNF SSFSSRLSTT LFLQHKCSET  240
YITV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044772001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137878.11e-172PREDICTED: transcription factor bHLH27
RefseqXP_013738256.11e-172transcription factor bHLH27-like
SwissprotQ700E31e-136BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A078GY651e-180A0A078GY65_BRANA; BnaA03g49880D protein
TrEMBLM4E5R11e-180M4E5R1_BRARP; Uncharacterized protein
STRINGBra024115.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.15e-97bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]