![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00044566001 | ||||||||
Common Name | GSBRNA2T00044566001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 400aa MW: 45996.2 Da PI: 7.2467 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.4 | 8e-28 | 80 | 161 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWee+s+kmre+gf rsp++C++kw+nl k+ykk k++++++ +s +++y++++e GSBRNA2T00044566001 80 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEEISAKMREKGFDRSPTMCTDKWRNLLKEYKKAKHHDRGN---VSAKMSYYKEIE 161 ********************************************************************95...77889****998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-4 | 70 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.072 | 72 | 136 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0095 | 76 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 7.16E-31 | 78 | 143 | No hit | No description |
Pfam | PF13837 | 1.1E-20 | 79 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 400 aa Download sequence Send to blast |
MFVSDKPRPN DFYKDDNTNS SSAARNMIID GDLQPHNHNH NHHHHNQHHH NHLQPQQILL 60 GESSSEDHEV KAPKKRAETW VQDETRSLIM FRRGMDGLFN TSKSNKHLWE EISAKMREKG 120 FDRSPTMCTD KWRNLLKEYK KAKHHDRGNV SAKMSYYKEI EDILRERSKK VTQYSKSPNT 180 PPIAKVDSFM QFTDKGFDDP SISFGSVEAN GRPGLNLERS LDHDGHPLAI TTVDAVPANG 240 VPPWNWRETP GNAGGDAHGQ PFGGRVITVK FGDYTRRIGI DGTAEAIKET IRSAFRLRTR 300 RAFWLEDEDQ VVRCLDRDMP LGNYLLHVDG GVAIRVCHYD ESNQLPVHTE EKIFYTEEDY 360 RDFLARRGWT YLQVDGFRNI DNMDDLQAGA VYRGVRERM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-53 | 74 | 159 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00141 | DAP | Transfer from AT1G13450 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00044566001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747921.1 | 0.0 | trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A078GX12 | 0.0 | A0A078GX12_BRANA; BnaC05g09890D protein | ||||
STRING | Bo5g017510.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|