PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044505001
Common NameGSBRNA2T00044505001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 356aa    MW: 40579.4 Da    PI: 7.0345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044505001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.8e-52101401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL+kkv++ +++l ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  GSBRNA2T00044505001  10 LPPGFRFHPTDEELILYYLRKKVSSLPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 98 
                          79****************************.89***************988899************************************ PP

                  NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + +      +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  GSBRNA2T00044505001  99 LIAVPnregFNENIGIKKALVFYTGKPPKGVKTNWIMHEYRL 140
                          **99855554556***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-617186IPR003441NAC domain
PROSITE profilePS5100559.69310186IPR003441NAC domain
PfamPF023658.6E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MISKDPRSSL PPGFRFHPTD EELILYYLRK KVSSLPVPLS IIADVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNREGFNE NIGIKKALVF  120
YTGKPPKGVK TNWIMHEYRL AESLSPKRVT PARNGSQVNN LGDRTLKSTE YSMRLDDWVL  180
CRIYKKSHAS LSSPDVASAT SDGQEHEENN NEPFVVSETL LPNLANDQTL KRQQSSFSNL  240
LDATDLTFLT NFLNETPENR NESEFSFMFG DFSNPDIYGN HYLGHKLPQL SSPTSETRVI  300
GNKRERVDYA EEMMNNSKKI NNFSYNIDHW DHSLIQQSSF LNQELLISPH LQYQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-70919019172NAC domain-containing protein 19
3swm_B3e-70919019172NAC domain-containing protein 19
3swm_C3e-70919019172NAC domain-containing protein 19
3swm_D3e-70919019172NAC domain-containing protein 19
3swp_A3e-70919019172NAC domain-containing protein 19
3swp_B3e-70919019172NAC domain-containing protein 19
3swp_C3e-70919019172NAC domain-containing protein 19
3swp_D3e-70919019172NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.112840.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044505001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747600.0KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639766.10.0PREDICTED: NAC transcription factor 25-like
RefseqXP_022571023.10.0NAC transcription factor 47-like
SwissprotQ84TD60.0NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A078GZE80.0A0A078GZE8_BRANA; BnaC01g40250D protein
TrEMBLA0A0D3AFP40.0A0A0D3AFP4_BRAOL; Uncharacterized protein
STRINGBo1g152220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.10.0NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]