PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00043201001 | ||||||||
Common Name | GSBRNA2T00043201001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 204aa MW: 22850.2 Da PI: 5.3417 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 9.7e-21 | 78 | 138 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ GSBRNA2T00043201001 78 RNRWTPTSTQLQILESIYEEkSGTPNRRRIREIAAELsehgQITETNVYNWFQNRRARSKR 138 89*****************9899************************************97 PP | |||||||
2 | Wus_type_Homeobox | 97 | 1.5e-31 | 77 | 140 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++ tPn+++i++i+aeL+e+G+i+++NV++WFQNr+aR+++kq GSBRNA2T00043201001 77 TRNRWTPTSTQLQILESIYEEKSGTPNRRRIREIAAELSEHGQITETNVYNWFQNRRARSKRKQ 140 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 71 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.046 | 74 | 139 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-18 | 76 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.0E-14 | 76 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.36E-15 | 78 | 140 | No hit | No description |
Pfam | PF00046 | 1.9E-18 | 78 | 138 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MERENQNGAY VGRGVMTEEQ METLRKQIAV YSVICEQLAL LHNSLSSFHP LSSGITPNGD 60 GYFNPMVASS SAQRISTRNR WTPTSTQLQI LESIYEEKSG TPNRRRIREI AAELSEHGQI 120 TETNVYNWFQ NRRARSKRKQ PQTIATTDQA EDAAVTTDEK RSCGDSGGFE SYEHILFPSP 180 DLGIEHLLSR GELSGDFNSY TID* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00043201001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189247 | 0.0 | AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022543051.1 | 1e-152 | WUSCHEL-related homeobox 14-like | ||||
Swissprot | Q9LM84 | 1e-114 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | A0A078GVI8 | 1e-150 | A0A078GVI8_BRANA; BnaA06g14590D protein | ||||
STRING | Bra025839.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-117 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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