PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SBP

Protein Properties

Length: 1032aa MW: 113993 Da PI: 8.1891

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00043168001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.4	5.4e-40	129	206	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ k+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+++ GSBRNA2T00043168001 129 VCQVDNCSQDLSHGKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 206 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-32	123	191	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.821	127	204	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-36	128	206	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-28	130	203	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.6E-8	785	933	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.88E-10	785	919	No hit	No description
SuperFamily	SSF48403	1.67E-8	788	927	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	10.285	828	938	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MEEVGAQVAA PLFIHQSLSP MGRKRNLYHH QMPNRLVPPQ PEQRRDEWNS NMWDWDSRRF 60 EAKPVDAEAL RLGSQTQFDL TSRKVGEERG LDLNLGSCLN AAEEETAQAA RPSKKGRSGS 120 PGSGGNYPVC QVDNCSQDLS HGKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL 180 SEFDEGKRSC RRRLAGHNRR RRKTTQPEEV ASGVVAPGNR DSTSNANMDL MALLTALACA 240 QGKNEVRPIG SPAVPQREQL LQILNKINAL PLPMDLVSKL NSIGSLARKN TDHPVANPQN 300 DVNGASPSTM DLLAVLSETL GSSSPDTLAI LSQGGFGTKE NDKAKLSSYD HVATANLEKR 360 TVGGERSSSS NQSPSQDSDS HAQDTRSSLS LQLFTSSPED ESRRPAVASS RKYYSSASSN 420 PVEDRSPSSS PVMQELFPLQ RSPETMRSKN HNNTSPVRTG GCLPLDLFGA SNRGDANPNF 480 KGFGQQCGYA SSGSDYSPPS LNSDAQDRTG KIVFKLLDKD PSQLPGTLRT EIYNWLSSIP 540 SEMESYIRPG CVVLSVYVAM SPAAWEQLEQ NLQQRVAVML QDSHSGFWRD SRFIVNTGRQ 600 LASHKNGRIR CSKSWRTWNS PELISVSPVA VVAGEETSLV IRGRSLTNDG ISIRCTDMGS 660 YMSMEATGAA CKRAMFDELN VKCFRVNNAQ PGFLGRCFIE VENGFRGDSF PLIIANASIC 720 KELNRLEEEF HPKSQEQAQT SDHRPTSREE ILCFLNELGW LFQKNQTTEP LEQSEFSLSR 780 FKFLLVCSVE RDYCAVIRTL LDMLVERNVV NDEPNREALD MLAEIQLLNR AVKKKSTKMV 840 ELLIHYSVNL GSSKKLVFLP NITGPGGITP LHLAACTSDS DDMVDLLTND PQEIGLSSWN 900 SLCDATGQTP YSYAAMRNNH TYNSLVARKL ADKRNKQVSL NIESEIVVDQ LGVSRRSSTE 960 LNKSSCVSCA TVALKYRRRA SGSHRLFPTP IIHSMLAVAT VCVCVCVFMH AFPIVRQGSH 1020 FSWGGLDYGS I*

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MEEVGAQVAA PLFIHQSLSP MGRKRNLYHH QMPNRLVPPQ PEQRRDEWNS NMWDWDSRRF  60
EAKPVDAEAL RLGSQTQFDL TSRKVGEERG LDLNLGSCLN AAEEETAQAA RPSKKGRSGS  120
PGSGGNYPVC QVDNCSQDLS HGKDYHRRHK VCEVHSKATK ALVGKQMQRF CQQCSRFHLL  180
SEFDEGKRSC RRRLAGHNRR RRKTTQPEEV ASGVVAPGNR DSTSNANMDL MALLTALACA  240
QGKNEVRPIG SPAVPQREQL LQILNKINAL PLPMDLVSKL NSIGSLARKN TDHPVANPQN  300
DVNGASPSTM DLLAVLSETL GSSSPDTLAI LSQGGFGTKE NDKAKLSSYD HVATANLEKR  360
TVGGERSSSS NQSPSQDSDS HAQDTRSSLS LQLFTSSPED ESRRPAVASS RKYYSSASSN  420
PVEDRSPSSS PVMQELFPLQ RSPETMRSKN HNNTSPVRTG GCLPLDLFGA SNRGDANPNF  480
KGFGQQCGYA SSGSDYSPPS LNSDAQDRTG KIVFKLLDKD PSQLPGTLRT EIYNWLSSIP  540
SEMESYIRPG CVVLSVYVAM SPAAWEQLEQ NLQQRVAVML QDSHSGFWRD SRFIVNTGRQ  600
LASHKNGRIR CSKSWRTWNS PELISVSPVA VVAGEETSLV IRGRSLTNDG ISIRCTDMGS  660
YMSMEATGAA CKRAMFDELN VKCFRVNNAQ PGFLGRCFIE VENGFRGDSF PLIIANASIC  720
KELNRLEEEF HPKSQEQAQT SDHRPTSREE ILCFLNELGW LFQKNQTTEP LEQSEFSLSR  780
FKFLLVCSVE RDYCAVIRTL LDMLVERNVV NDEPNREALD MLAEIQLLNR AVKKKSTKMV  840
ELLIHYSVNL GSSKKLVFLP NITGPGGITP LHLAACTSDS DDMVDLLTND PQEIGLSSWN  900
SLCDATGQTP YSYAAMRNNH TYNSLVARKL ADKRNKQVSL NIESEIVVDQ LGVSRRSSTE  960
LNKSSCVSCA TVALKYRRRA SGSHRLFPTP IIHSMLAVAT VCVCVCVFMH AFPIVRQGSH  1020
FSWGGLDYGS I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	119	203	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8352	0.0	leaf\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00043168001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353554	0.0	AK353554.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-I08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149579.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Refseq	XP_013642268.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A078GWF8	0.0	A0A078GWF8_BRANA; BnaA06g14810D protein
TrEMBL	A0A3P5YGB3	0.0	A0A3P5YGB3_BRACM; Uncharacterized protein
TrEMBL	M4EAQ4	0.0	M4EAQ4_BRARP; Uncharacterized protein
STRING	Bra025863.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Entrez Gene	106347297

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]