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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00041687001 | ||||||||
Common Name | GSBRNA2T00041687001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 466aa MW: 51988.6 Da PI: 7.2492 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ GSBRNA2T00041687001 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.1E-9 | 1 | 53 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.92E-16 | 6 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.2E-13 | 7 | 40 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 5.2E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 8.3E-7 | 234 | 328 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RPEGDEVEID 60 DRRGGQKMMM INGMFMNKKR KPYQENFTVK RTSLEFSNGF KKRALEEEAS NNRSSSGSVV 120 SNSESCDQSN AWETSFAACK KRTCVGRPKA ASSSVEKLTK DLFSILQEQQ SSCCVSGTSE 180 EELLFENESP MVIGHGSVLL RDPREDSEAS SLLVESSKSS SIHSHNFGGK AIKQEQLKRT 240 KSQVLGRHSL PLCNIDLKYV FNFDEFKEKF TKEEQQKLMK LLPQVDLPDS LLSMFESSQF 300 KENFSLFQQF VADGVFGTSS SSGSKLEEFK TLAKLALSDP NKSHMLESYQ MLKRKGIEDS 360 SRVSNQTPSD NHSLVTIERP CESLNQNFSE TRVVMKSPKE VMKIRSKHIE TKEIIENSVS 420 SLNHMSYGGS MVCGGYEDND NSAQDLLLDV PSNGSFPQAE LLHMI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00041687001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183495 | 0.0 | AC183495.1 Brassica oleracea Contig A, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013696463.1 | 0.0 | GATA transcription factor 27-like isoform X2 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | A0A078GV25 | 0.0 | A0A078GV25_BRANA; BnaA02g25040D protein | ||||
STRING | Bo2g132210.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |
Publications ? help Back to Top | |||
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