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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00041588001 | ||||||||
Common Name | GSBRNA2T00041588001, LOC106426277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 977aa MW: 108567 Da PI: 5.954 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 167.7 | 1.8e-52 | 12 | 127 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e ++rwlk+ e++ iL+n++++elt++++++p+sgsl L+n++++++frkDG++w+kk+dg+++ E+he+LKvg+ve+l+cyYah+e++ GSBRNA2T00041588001 12 QEaQTRWLKPPEVYFILKNHDRYELTHKAPHKPTSGSLCLFNKRVLKFFRKDGHHWRKKRDGRAIAEAHERLKVGNVEALNCYYAHGEHD 101 6669************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 p+fqrr++w+L+ e+++ivlvhy++v GSBRNA2T00041588001 102 PSFQRRIFWMLDLEYDHIVLVHYRDV 127 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 71.561 | 7 | 133 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.7E-69 | 10 | 128 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.6E-45 | 13 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.0E-8 | 430 | 523 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 1.66E-7 | 438 | 523 | No hit | No description |
Pfam | PF01833 | 1.6E-9 | 438 | 521 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.37E-17 | 438 | 522 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 8.8E-15 | 615 | 711 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.512 | 616 | 708 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.58E-15 | 618 | 710 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.40E-12 | 636 | 708 | No hit | No description |
Pfam | PF12796 | 4.4E-7 | 637 | 709 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.686 | 649 | 681 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.018 | 649 | 678 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1300 | 688 | 717 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 11 | 762 | 784 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 7.26E-12 | 763 | 859 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.547 | 763 | 789 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.51 | 808 | 830 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.334 | 809 | 835 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0042 | 810 | 829 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 6.5E-4 | 831 | 853 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.736 | 832 | 856 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.2E-4 | 833 | 853 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 977 aa Download sequence Send to blast |
MHSEYEIRTL NQEAQTRWLK PPEVYFILKN HDRYELTHKA PHKPTSGSLC LFNKRVLKFF 60 RKDGHHWRKK RDGRAIAEAH ERLKVGNVEA LNCYYAHGEH DPSFQRRIFW MLDLEYDHIV 120 LVHYRDVSDK KEGKQSSGTV LQFSLNPSAL FSSPSYSHHI GDSSTDVQQQ HSEEGSGSSY 180 EAIKRLEEQL SLGDDNNVVQ NESLDGLQFL DFSTDVDHLV PPPATVHQRP ESSSKLGRCY 240 GGYVGSQYNN VTTVGPPLYS QNESLDSLLS LEYIKDMNQL AQPAAGQQRP ESNRLDRSFG 300 GYIGTEYHPN NLMLLNNGSG GSGGSGDQKT GSWKDVLEAC GASIALNSQG STPSQANGLL 360 PVITQEDSNW DYGNQADQGT LLLPQELDSS LQLPPCYSEL VAPENNGDHS RLMVDEEQTG 420 PPLEQVMNDT VAYNQKFTIQ DISPEWGYAN ETTKVIIIGS FLCDPTESTW ACMFGNAQVP 480 FEIIKEGVIR CQAPPCGPGK VNLCITSGDG LSCSQIIEFE YRDKPDDRSC PKSSPDELLL 540 LVKFVQTLLL DRKGNIEPST DDDEWRRIID RIRDGTSTSS STVDWLLQEL LKDKLEAWLS 600 SRSQDKDQTS CSLSKQEQGI IHMVAGLGFD WALSPILGHG VSVDFRDGNG WSALHWAAQL 660 GSEKMVAALI ASGASAGAVT DPNTQDPVGK TPASIAASNG HKGLAGYLSE VALTTHLSSL 720 TLEETESSKE SAQAEAEITV KSIAGRSHPV NDDPQSLAAL KNAAEAAARI QAAFRAHSFR 780 KRQQKADMYA CLKEYGMYGD MSKQNARNYH SAALSIQKKY RGYKGRKEFL TKRQKAVMIQ 840 AHVRGYQTRK QYKVICWAVG MLDKVILRWR RKGVGLKGFR QDVESGEDSE DEDILRVFRK 900 QKVDGAVNEA FSRVMSMTRT LEARQQYHRV LTTYCKKKAE LGKTETLGIG GSGDYEDDDA 960 LFDIADMEYD HLFSLP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19840 | 1e-172 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00041588001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013722452.1 | 0.0 | calmodulin-binding transcription activator 4 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A078GUX0 | 0.0 | A0A078GUX0_BRANA; BnaC06g26850D protein | ||||
STRING | Bo6g099030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6476 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Entrez Gene | 106426277 |
Publications ? help Back to Top | |||
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