PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041385001
Common NameGSBRNA2T00041385001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 479aa    MW: 55383.6 Da    PI: 5.1397
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041385001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.91.1e-5461331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgk
  GSBRNA2T00041385001   6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGK 94 
                          79****************************.99***************6345667999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v   +++ +g+kktLv+y+grap+g +t Wvmheyrl
  GSBRNA2T00041385001  95 DRRVSW-RDRSIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                          *****9.8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-634157IPR003441NAC domain
PROSITE profilePS5100561.0256157IPR003441NAC domain
PfamPF023657.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRSIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDENECEP SAYGMQDAYA LCRVFKKIVI EAKPRDQHRS YIHAMSNVSG  180
NSSFDPCSDL EICSTTHQVQ NAFQPQIGNG RFNSNASNEN WSQYYGSSYP PFPTPYKVNN  240
EIECSMLQHN ISLPPLRIEN SAVSNYDFYN TSTTHNNDHG VLEDFTFAAS NSNHYNNTVG  300
DHVIHVGNYD EPLIMSNNYT NQGYIEEQKI ILTLDDNDQD LGFHGDNTNI NIDIDDFFSF  360
DMYNEENVIR VKGNEEDVNI NEAVDSSGFE VVEEEIRVNN QMLISTYQTT KILYHQVVPS  420
HTLKVQINLI NHNVEERILF IEEDNDSWVQ RAEKITKIKL NLVSLIAQQY YKYLTIFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-55115715168NAC domain-containing protein 19
3swm_B4e-55115715168NAC domain-containing protein 19
3swm_C4e-55115715168NAC domain-containing protein 19
3swm_D4e-55115715168NAC domain-containing protein 19
3swp_A4e-55115715168NAC domain-containing protein 19
3swp_B4e-55115715168NAC domain-containing protein 19
3swp_C4e-55115715168NAC domain-containing protein 19
3swp_D4e-55115715168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041385001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584829.10.0PREDICTED: NAC domain-containing protein 45-like
SwissprotA4VCM00.0NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A078GQC30.0A0A078GQC3_BRANA; BnaCnng06310D protein
STRINGBo5g150170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.10.0NAC domain containing protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]