PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00041349001
Common NameGSBRNA2T00041349001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 391aa    MW: 43051.3 Da    PI: 7.2344
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00041349001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114167127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         +++++C+++ rtG C++G++C+F+H+p
  GSBRNA2T00041349001 41 PGEPNCSYYIRTGLCRFGSTCRFNHPP 67
                         5789*********************97 PP
2zf-CCCH37.63.7e-1288112327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C ++++tGtCk+G +CkF+H++
  GSBRNA2T00041349001  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                          799********************96 PP
3zf-CCCH37.93e-12134158327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C +f+rtG+Ck+G++CkF+H++
  GSBRNA2T00041349001 134 EVDCAYFLRTGHCKFGATCKFNHPQ 158
                          578********************97 PP
4zf-CCCH37.15.1e-12275301127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G  CkF+H++
  GSBRNA2T00041349001 275 PGQPECQFYMKTGDCKFGTVCKFHHPR 301
                          5789*********************96 PP
5zf-CCCH38.42.1e-12321347127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G+Ck+G++CkF+H++
  GSBRNA2T00041349001 321 PGEPLCVFYSRYGICKFGPSCKFHHPM 347
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.544068IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-44666IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-491112IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-10134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22274302IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8276301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6278303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4280302IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507320348IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9322347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6323348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4325346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMTQEA MWQMNLSHDE TMEAGSYPER PGEPNCSYYI RTGLCRFGST  60
CRFNHPPDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGA TCKFNHPQPQ PTTSLMVPTS GQQQSYPWSS  180
ASFIPSPRWQ DPSGYTPLLM PQGVVPVQGW NPYTGQLGSV SPSGTGNDHT NYRNMQQNEA  240
GSQSQGSVSG LNTASSVPLG GFFALPSESV FPERPGQPEC QFYMKTGDCK FGTVCKFHHP  300
RDRQAPPPDC LLSPIGLPLR PGEPLCVFYS RYGICKFGPS CKFHHPMEVF AYDNTASETD  360
EVVETSGGHS RRVSVSETRQ ATTSGEDTTN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99720.0flower| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00041349001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587446.10.0PREDICTED: zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A078GUD70.0A0A078GUD7_BRANA; BnaCnng05980D protein
TrEMBLA0A3P6FPD90.0A0A3P6FPD9_BRAOL; Uncharacterized protein
STRINGBo5g151450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]