PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040908001
Common NameGSBRNA2T00040908001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 490aa    MW: 56923.9 Da    PI: 4.5607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040908001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.98e-2351362128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra......tksgyW 83 
                          p+G rF Pt+  lv+ +Lk kve++      +ik++++y   Pw L++ ++   +++ewy+F++r  +  +    +r+         g+W
  GSBRNA2T00040908001   5 PRGSRFLPTELGLVKLHLKDKVEKNIS---GFIKTLNVYGDAPWLLHHDTNPlySRNEWYYFVPRTIRGVK--TVSRMvpsngeSLGGTW 89 
                          89********************99874...46**************85332233778******99876543..23332122222559*** PP

                  NAM  84 katgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                          k+ gk ke+++k++el+g k++Lvf k+   + + +ktdW m+ey+l
  GSBRNA2T00040908001  90 KSIGKRKEIKKKDKELMGYKTVLVFNKNvaGELEKKKTDWHMDEYSL 136
                          **************************7532445568*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-273152IPR003441NAC domain
PROSITE profilePS5100529.4634154IPR003441NAC domain
PfamPF023651.1E-145136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MRTYPRGSRF LPTELGLVKL HLKDKVEKNI SGFIKTLNVY GDAPWLLHHD TNPLYSRNEW  60
YYFVPRTIRG VKTVSRMVPS NGESLGGTWK SIGKRKEIKK KDKELMGYKT VLVFNKNVAG  120
ELEKKKTDWH MDEYSLHRNG DEFHDLVLCH VRLLYSAERF KPHVPTALQV DVKNDDNNND  180
VVLPNQEQQE AAGDVNQPQQ QQQEQQEEQE DYILVDRHLR SNHNQIQYLL EDIVNQNGRV  240
YVNQHQQQQQ EQEDSPDPLL LPPLQSNDNQ ERHPLDDIAF DGADDNLTID IDELLKILDE  300
GKEQEDSPTL PLPPPLQSNV NQEPCLSWDT NYVPSQVENN YNNNTILQNQ EQQEAGFANH  360
YDMTMMVEKE HGDIKQQYQQ QQDQEQQHID LQSLLYDPEW HDLCFMPPLQ SDDNHGQRPL  420
VPSQVESYYN NNTVLPNQEQ REAGFANQND MTMMVAKEHD SITHNPDGSL TQQQLQKLEI  480
FIDNLNLSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00040908001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510860.10.0PREDICTED: uncharacterized protein LOC103844301
TrEMBLA0A078JG300.0A0A078JG30_BRANA; BnaCnng43170D protein
STRINGBra033406.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1883757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-30NAC domain containing protein 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]