PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038880001

Common Name

GSBRNA2T00038880001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 318aa MW: 34600.8 Da PI: 6.8036

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038880001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.2	1.1e-28	48	141	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ GSBRNA2T00038880001 48 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRLHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEEAESYWVM 137 8********************97778888888****************************************************99 PP trihelix 82 fdql 85 +++ GSBRNA2T00038880001 138 RNDV 141 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-12	48	138	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-5	48	113	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	48	114	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MALEPLGLGV NVVDGDGNVN GGGENNNTTT TPSNEGGDDG VKTARLPRWT RQEILVLIQG 60 KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCRLHGVN RGPVQCRKRW SNLAGDYKKI 120 KEWESQVKEE AESYWVMRND VRRERKLPGF FDKEVYDIVD GGVVPPANPV LALGLAPAST 180 SAEEPARSVE KLSSASAPKS LIDVIDKEKQ AACEAADQGG MKEKHPEAAN PEAASTSQEE 240 RKRKRTSSGD EEGEATKSRQ DQLIEILERN GQLLAAQLEV QNTNLKLDRE QRKDHGDNLV 300 AVLNKLADAV AKIADKL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6150	5e-89	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038880001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	1e-148	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013752299.1	0.0	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-171	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A078GS12	0.0	A0A078GS12_BRANA; BnaCnng05440D protein
STRING	Bo4g043600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-162	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106454729

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]