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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSBRNA2T00038358001 |
| Common Name | GSBRNA2T00038358001, LOC106367323 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
SBP |
| Protein Properties |
Length: 330aa MW: 36764.9 Da PI: 9.1335 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00038358001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 127.2 | 6.3e-40 | 153 | 229 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+Cqv+gCe dls+ak+yhr+h+vCe+hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q
GSBRNA2T00038358001 153 RCQVDGCELDLSSAKDYHRKHRVCETHSKCPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 229
6**************************************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MDCNMTSPLW DWDHFLMSNP SKPENDKRRP SSEWGIEKGE GIESIFPSFE RVSSGGSTTG 60
FSTSSSSPIF RHANLPSETS PGDSFSNIDF VQVKTSTAES DLCLKLGKQT YSEDFWGRSN 120
NEVSAVSVKL LAPSVVARKK SKPYGQSSMQ VPRCQVDGCE LDLSSAKDYH RKHRVCETHS 180
KCPKVTVGGL ERRFCQQCSR LHAVSEFDEK KRSCRKRLSH HNARRRKPQG VFPLNPERNC 240
NGRQHPNMLW NGLSLNTVPD EKYVWSPSYD TKPTQMESGF TLSFQRGRGP EEHLYAGSSR 300
SFSTFQTSGG FSAGRSNSQL PGKAGVGEY*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 209 | 226 | KKRSCRKRLSHHNARRRK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189649 | 0.0 | AC189649.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010I09, complete sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Yu N,Niu QW,Ng KH,Chua NH
The role of miR156/SPLs modules in Arabidopsis lateral root development.
Plant J., 2015. 83(4): p. 673-85
[PMID:26096676] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
PLoS Genet., 2016. 12(8): p. e1006263
[PMID:27541584] - Gao R,Wang Y,Gruber MY,Hannoufa A
miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79.
Front Plant Sci, 2017. 8: p. 2226
[PMID:29354153] - Dotto M,Gómez MS,Soto MS,Casati P
UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana.
Plant Cell Environ., 2018. 41(6): p. 1394-1406
[PMID:29447428]
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