PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00038290001
Common NameGSBRNA2T00038290001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 208aa    MW: 23600.5 Da    PI: 7.0186
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00038290001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.48.2e-08164185120
                 GATA   1 Cs..nCgttkTplWRrgpdgnk 20 
                          C+  nC++++Tp+WR+gp g+k
  GSBRNA2T00038290001 164 CTnmNCKAINTPMWRKGPLGPK 185
                          55559***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.108.5E-5167183IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MENELDLTLR LSLPSPTVET HLSLNTLTTD QGNNFESNRR DNNDVGEIRG RRHILWNNDE  60
STNDHEGGRK NVDVNIQYYN LIFNHFAGVG ETLNFEPFPM QPSPAPVPET PTGSDYVLID  120
VPAKRAQRNS LTFKNAVDAH AILGRRWGCS GACTARRINE MRKCTNMNCK AINTPMWRKG  180
PLGPKAKFMQ CLWDKVQEGE REEMQWN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00038290001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632513.11e-135PREDICTED: GATA transcription factor 29
SwissprotQ9LT456e-34GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A078GQG21e-154A0A078GQG2_BRANA; BnaC01g32490D protein
STRINGBo1g108670.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-36GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]