PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00038269001 | ||||||||
Common Name | GSBRNA2T00038269001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 359aa MW: 40251.5 Da PI: 7.1314 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.4e-05 | 199 | 218 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ GSBRNA2T00038269001 199 FSCPLCFKTFNRYNNMQMHM 218 89*****************9 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00032 | 283 | 305 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ GSBRNA2T00038269001 283 FACRRCGKAFAVKGDWRTHEKNC 305 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 199 | 226 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 199 | 218 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 201 | 221 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.75E-6 | 269 | 303 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-6 | 270 | 303 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 283 | 303 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MSDPACIFSN GFLDNYDYSF NYSTSLSHIY NSNGSFYSSN TTKINPNSTS PDSPPLREAL 60 PLLSLSPIHK HKAASVSHHE YYFMETTEQS STSNFLDHDL GQCQETQHHD VTVDLHLGLT 120 NLGGDAIACG GGGSSSSDAI LDSTDQEHHH DLHQDRHQYP EVEVTLVSDH DGHGGVQRGI 180 HHHYWIPTPS QILMGPTQFS CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM 240 LRLSCYCCAP GCKNNINHPR ARPLKDFRTL QTHYKRKHGA RPFACRRCGK AFAVKGDWRT 300 HEKNCGKLWY CSCGSDFKHK RSLKDHVKAF GNGHVPCFGN DCFGDHEDEA ASDVEHQE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14600 | 1e-171 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00038269001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311811 | 1e-179 | AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594912.1 | 0.0 | PREDICTED: zinc finger protein WIP4-like | ||||
Refseq | XP_013682397.1 | 0.0 | zinc finger protein WIP4-like | ||||
Swissprot | Q8W030 | 0.0 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A078GQF9 | 0.0 | A0A078GQF9_BRANA; BnaC01g32390D protein | ||||
STRING | Bo1g108560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 0.0 | WIP domain protein 4 |
Publications ? help Back to Top | |||
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