PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038196001

Common Name

GSBRNA2T00038196001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 311aa MW: 35392.2 Da PI: 8.5999

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038196001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.5e-11	159	209	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h +Er+RR+++N ++ Lr+++P++ + + + a+i+ A++++k L GSBRNA2T00038196001 159 QRMTHITVERNRRRQMNVHLNSLRSIIPSS---YFLRGDQASIVGGAIDFVKIL 209 79*************************9...99999********999866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.99E-9	157	214	No hit	No description
PROSITE profile	PS50888	13.402	158	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-14	158	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-8	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-11	159	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-6	164	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MERIQGQNKL CVNLLDQKVN VRRSLQVQAS AEDHSFPLEE DQSSNLTLQG TRLPFQQILQ 60 DPSSVLSFKD PHILGNYLPH EVPELHSPIH SETNHYYQNS LLEGTNEDIS SQELQLNPVD 120 NAFSRGKLRN NNLAASVSRE KRKRRRSKPM KNREEIESQR MTHITVERNR RRQMNVHLNS 180 LRSIIPSSYF LRGDQASIVG GAIDFVKILE QHLQSLEAQK ITQQTSKLII DATVMERHVN 240 LKMQCCQRRQ GQLVRSIFLL EKLGLTVLHL NVTSPCNASI AYSFNLKMED ACNLGSADEI 300 TAAVRQIFDC *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	145	KRKRRR
2	141	145	RKRRR
3	141	146	RKRRRS
4	141	148	RKRRRSKP
5	159	170	RMTHITVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038196001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634340.1	0.0	PREDICTED: transcription factor bHLH70-like isoform X3
Swissprot	O81037	1e-135	BH070_ARATH; Transcription factor bHLH70
TrEMBL	A0A078GQE3	0.0	A0A078GQE3_BRANA; BnaC04g51620D protein
TrEMBL	A0A0D3C6M4	0.0	A0A0D3C6M4_BRAOL; Uncharacterized protein
STRING	Bo4g197360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	1e-137	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]