PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00038190001

Common Name

GSBRNA2T00038190001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 305aa MW: 33986.2 Da PI: 9.0243

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00038190001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102.4	2.5e-32	28	129	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kv tpsdv+k++rlv+pk++ae++ ++++ ++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ GSBRNA2T00038190001 28 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNGKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCV 117 89*************************966667899***********************************************653 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 + +l++ ++r+ GSBRNA2T00038190001 118 -GDSRLFIDWRRR 129 .566679999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.4E-41	22	131	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.09E-30	25	128	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.26E-25	26	124	No hit	No description
PROSITE profile	PS50863	15.044	28	130	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-25	28	130	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-29	28	129	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MMTNLSLARE GEAEAKKPIE KVEREHMFDK VVTPSDVGKL NRLVIPKQHA ERYFPLDSSS 60 NGKGLLLNFE DLTGKSWRFR YSYWNSSQSY VMTKGWSRFV KDKKLDAGDI VSFQRCVGDS 120 RLFIDWRRRP KVPDYPTSTA HFAGGVMFPR FYSFPTATTS TCYDLYNHQP PRHHHIGYGY 180 PQIPREFGYG YFVRSVDQRS VVADPLVIES VPVMMRGGAR VSQEVVGTAG KRLRLFGVDM 240 ECGESGVTNS TEEESSSSGG SLPRAGGGGA SSSSSLFQLR LGSSCEDDHF SKKGKSSLPF 300 DLDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-72	22	132	2	116	B3 domain-containing transcription factor NGA1
5os9_B	3e-72	22	132	2	116	B3 domain-containing transcription factor NGA1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16514	1e-125	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00038190001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232491	0.0	AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013688174.1	0.0	B3 domain-containing transcription factor NGA1-like
Swissprot	O82799	1e-157	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	A0A078GLT3	0.0	A0A078GLT3_BRANA; BnaC04g51560D protein
TrEMBL	A0A3P6CPP3	0.0	A0A3P6CPP3_BRAOL; Uncharacterized protein
STRING	Bo4g197410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1307	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-144	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]