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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
GSBRNA2T00038138001 |
| Common Name | GSBRNA2T00038138001 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
ERF |
| Protein Properties |
Length: 194aa MW: 22068.9 Da PI: 9.3418 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSBRNA2T00038138001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.5 | 9.3e-20 | 64 | 112 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ a+ +++g
GSBRNA2T00038138001 64 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTAEEAARAYDSAAIRIRG 112
9*******.**********954...4************************998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0034059 | Biological Process | response to anoxia |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 194 aa
Download sequence Send
to blast |
MCGGAVISDF IWSLRRPSFA EPDPSQLGYE GCVSIEKRVC SGSGKDGTEK KKEGKNKRER 60
KNMYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFKTAEEAA RAYDSAAIRI RGGKAKLNFP 120
NDDSTRRNCI IKKNKEVYDK ENQEVKQLSE ELMAFEDYMG FYQIPYLDGQ SATEDVPQQI 180
SLIGNLWSFQ DNV*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC002535 | 9e-64 | AC002535.3 Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete sequence. |
| GenBank | AY074645 | 9e-64 | AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds. |
| GenBank | CP002685 | 9e-64 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| Publications
? help Back to Top |
- Chalhoub B, et al.
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Science, 2014. 345(6199): p. 950-3
[PMID:25146293] - Gasch P, et al.
Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
Plant Cell, 2016. 28(1): p. 160-80
[PMID:26668304] - Yao Y,Chen X,Wu AM
ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
Plant Signal Behav, 2017. 12(6): p. e1329073
[PMID:28537474] - Eysholdt-Derzsó E,Sauter M
Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
Plant Physiol., 2017. 175(1): p. 412-423
[PMID:28698356] - Eysholdt-Derzsó E,Sauter M
Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
[PMID:29996004]
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