PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00037906001

Common Name

GSBRNA2T00037906001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 259aa MW: 29810.9 Da PI: 6.554

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00037906001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74.1	1.7e-23	114	174	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+ WrKYGqK++k+s++ rsYY+C+++ +C++kk+v+ +++p + +tY g+H+++ GSBRNA2T00037906001 114 HDGFLWRKYGQKQIKESDHQRSYYKCAYTsdqKCEAKKQVQMIQNNPPLYSTTYFGRHTCQ 174 6***********************9988889************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.2E-24	106	174	IPR003657	WRKY domain
PROSITE profile	PS50811	19.657	108	176	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-23	110	175	IPR003657	WRKY domain
SMART	SM00774	9.1E-33	113	175	IPR003657	WRKY domain
Pfam	PF03106	7.6E-23	115	174	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MESCQQKVME KLLHGHGCAS QLKLIMDHHA ESDSSMERED LAKSVLHCFS DALSILIDTN 60 DHNKDDDKSN NSSPQDSSHV LESSRKPFHK RGRKTSMAES SDYRRHESPN PIYHDGFLWR 120 KYGQKQIKES DHQRSYYKCA YTSDQKCEAK KQVQMIQNNP PLYSTTYFGR HTCQLHQAFE 180 TFPIDTSDLQ DSRMIRFDNP DSSTHQHQNQ IIHHKVEQMM PSEKAEEWSS PSEYMSSEVA 240 YAVEAFGFNP ARTSSDLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	8e-15	115	174	10	69	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00037906001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430069	0.0	KF430069.1 Brassica rapa WRKY transcription factor 62 (WRKY62) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022569876.1	0.0	probable WRKY transcription factor 62
Swissprot	Q9LZV6	1e-133	WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBL	A0A078JDN6	0.0	A0A078JDN6_BRANA; BnaCnng41380D protein
STRING	Bo5g068250.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14505	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01900.1	1e-121	WRKY DNA-binding protein 62

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]