PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037877001
Common NameGSBRNA2T00037877001, LOC106399784
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 291aa    MW: 33286.9 Da    PI: 4.9482
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037877001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.8e-5361341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeel+++yLk+kveg ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rdkky++g r+nr tk+gyWkatgk
  GSBRNA2T00037877001   6 LPPGFRFHPTDEELIDYYLKRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCSRDKKYPNGLRTNRGTKAGYWKATGK 94 
                          79****************************.99**************96435556888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++++++++vg +ktLvfykgrap g +t+W+mheyrl
  GSBRNA2T00037877001  95 DRKITCRSSSTVGYRKTLVFYKGRAPLGDRTSWLMHEYRL 134
                          **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-593159IPR003441NAC domain
PROSITE profilePS5100558.0726159IPR003441NAC domain
PfamPF023652.1E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGSSSLPPGF RFHPTDEELI DYYLKRKVEG LEIELEVIPV IDLYKFDPWE LPDKSFLPNR  60
DMEWFFFCSR DKKYPNGLRT NRGTKAGYWK ATGKDRKITC RSSSTVGYRK TLVFYKGRAP  120
LGDRTSWLMH EYRLCDDESS SQGSQYFKGA FVLCRVAKKN ENKNNSKIQR NLSEQTLGSG  180
ESSGYSSRVT SPSRDGTVPF HSFVNPVSTE TDFSNIWISS DFILDSSKDY PQIQDVAPEY  240
FQDFDFPVFG NQDVDVPAST LNANVDQSID ESMQTGYWTN SWYDQTGLFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-49516216168NO APICAL MERISTEM PROTEIN
1ut4_B2e-49516216168NO APICAL MERISTEM PROTEIN
1ut7_A2e-49516216168NO APICAL MERISTEM PROTEIN
1ut7_B2e-49516216168NO APICAL MERISTEM PROTEIN
3swm_A2e-49516219171NAC domain-containing protein 19
3swm_B2e-49516219171NAC domain-containing protein 19
3swm_C2e-49516219171NAC domain-containing protein 19
3swm_D2e-49516219171NAC domain-containing protein 19
3swp_A2e-49516219171NAC domain-containing protein 19
3swp_B2e-49516219171NAC domain-containing protein 19
3swp_C2e-49516219171NAC domain-containing protein 19
3swp_D2e-49516219171NAC domain-containing protein 19
4dul_A2e-49516216168NAC domain-containing protein 19
4dul_B2e-49516216168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosettes leaves, cauline leaves and stems. {ECO:0000269|PubMed:24285786}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00037877001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695691.10.0NAC domain-containing protein 96
SwissprotQ9LS241e-166NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A078JEB30.0A0A078JEB3_BRANA; BnaA06g40380D protein
TrEMBLA0A397Z4370.0A0A397Z437_BRACM; Uncharacterized protein
STRINGBra025012.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-169NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]